Xenopus laevis (African clawed frog): 379896
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Entry
379896 CDS
T01010
Symbol
pabpc1.S
Name
(RefSeq) polyadenylate-binding protein 1-A
KO
K13126
polyadenylate-binding protein
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03015
mRNA surveillance pathway
xla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
379896 (pabpc1.S)
09123 Folding, sorting and degradation
03018 RNA degradation
379896 (pabpc1.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
379896 (pabpc1.S)
03041 Spliceosome [BR:
xla03041
]
379896 (pabpc1.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
379896 (pabpc1.S)
mRNA cycle factors
Stress granule specific factors
379896 (pabpc1.S)
Spliceosome [BR:
xla03041
]
Complex C
Other components
Complex C specific factors
379896 (pabpc1.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RRM_10
RBD_RDR6
RRM_occluded
RRM_3
Motif
Other DBs
NCBI-GeneID:
379896
NCBI-ProteinID:
XP_041423881
Xenbase:
XB-GENE-963463
UniProt:
A0A1L8FTJ1
LinkDB
All DBs
Position
6S:117164961..117185786
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AA seq
633 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFER
HEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAY
YPPGQIAQLRPSPRWTAQGARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQVPRVMSAQR
VANTSTQTMGPRPTTAAAAAASAVRAVPQYKYAAGVRNQQHLNTQPQVAMQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEAAQKVVNATGVPTA
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccagtgctcccagctacccaatggcttccctgtacgttggagaccttcatcaa
gatgtaacggaggccatgctttatgagaagtttagcccagctggtcccattttgtcaatc
cgagtttgcagagatatgattacacgacgctcacttggatatgcatatgtcaacttccag
caaccagctgatgctgaacgtgctttggatacaatgaactttgatgtcataaagggcagg
cccgtgcggattatgtggtctcagcgtgacccttctctgcgtaagagtggagttggtaac
attttcatcaaaaacctggacaagtctattgataacaaagccttgtacgatacattttct
gcatttggaaacattctttcctgtaaggtggtttgtgatgaaaatggatccaagggctat
ggttttgttcactttgagacacaagaggctgctgagagggctattgataaaatgaatggc
atgcttctcaatgaccgcaaagtatttgttgggcgttttaagtcccgcaaagagcgtgaa
gctgagcttggtgccagagccaaggaatttacaaatgtttacatcaaaaattttggagac
gacatgaatgacgagaggctcaaagaaatgtttggcaaatatgggccagctcttagtgtt
aaagttatgactgatgacaatggaaagtcaaaaggctttggctttgtcagctttgaaaga
catgaagatgcacaaaaggctgttgatgaaatgaatggcaaggatatgaatgggaagtcc
atgtttgtgggccgtgcacagaaaaaggtggaaaggcaaactgagcttaagcgcaagttt
gaacaaatgaagcaggaccgaattaccagataccagggtgttaacctctatgttaaaaac
cttgatgatggtattgatgatgaacgactgcggaaagaattcttaccttttggtacaatc
accagtgctaaggtaatgatggaaggtggtcgcagtaaaggctttggttttgtatgcttt
tcttcacctgaagaggccactaaagcagtcacagaaatgaatggtagaattgttgccaca
aaacccctgtatgttgcattggcccaaagaaaagaagagcgtcaggctcacttgaccaac
cagtacatgcagaggatggcaagtgttcgtgtaccaaatcctgtgatcaacccataccag
ccaccaccatccagctatttcatggcagctatcccaccggctcaaaaccgtgctgcgtac
tacccacctgggcagattgcacagctcaggcccagcccccgttggactgcacagggtgcc
agacctcatccattccagaacatgcccggagcaatccgccctactgctccaagaccacca
acattcagtacaatgagaccggcttctaatcaagtcccacgtgtcatgtcagctcaacgt
gttgccaatacatcaacccagactatgggtcctcgtccaacgactgctgctgcagctgca
gcatctgctgtcagggctgttcctcagtataaatatgcggcgggtgtacgtaatcagcag
catcttaatacacagccccaagtggctatgcagcagcctgctgtccatgtacaaggccag
gaacctctgacggcttccatgctggcagctgctccacctcaagagcagaaacaaatgcta
ggtgagcggctcttcccacttatccaagcaatgcacccaactctggctggcaaaattact
ggaatgcttctggagattgacaactcggagcttctccatatgcttgaatcacccgagtca
ctgcgctcaaaggttgatgaagctgttgctgtgcttcaagcccatcaggctaaggaagct
gctcagaaggttgttaatgcaactggagtgccaactgcttaa
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