Xenopus laevis (African clawed frog): 380024
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Entry
380024 CDS
T01010
Symbol
smarcc1.L, smarcc1
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 L homeolog
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
380024 (smarcc1.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
380024 (smarcc1.L)
03036 Chromosome and associated proteins [BR:
xla03036
]
380024 (smarcc1.L)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
380024 (smarcc1.L)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
380024 (smarcc1.L)
PBAF complex
380024 (smarcc1.L)
GBAF(ncBAF) complex
380024 (smarcc1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
380024
NCBI-ProteinID:
NP_001080332
Xenbase:
XB-GENE-5906854
UniProt:
Q7ZY22
LinkDB
All DBs
Position
6L:complement(5656403..5706694)
Genome browser
AA seq
1226 aa
AA seq
DB search
MKQRQVGLGLPGGCNGSNNGEGSGGRLSSAGSRHRRRRRRGGGGAAGGEREDGSPAAAAR
EQIQSSRQYPGSRTREETRREAEEEDEEDGEEEEDEGDEEEEECEGDLPGGEEEEASRDA
DSMAAGASALSLARKKDGGPASKFWDSPETVSQLDSVRVWIGKHYKKYVQADSPTNKALA
ALVSQLLQFQEDAFGRHVTNPAFTKLPVKCFMDFKAGGALCHILGAAYKHRSDQGWRRFD
LQNPSRMDRNVEMFMTIEKTLMQNNCLSRPTVYLVPDIELKLANKLKDIVKRHQGAVTEE
KLKASHHVYPNPTSLDDDEWLRPVMKKDKQVQVHWGYYPDSYDTWIPASDLEAEVEDAPI
PEKPWKVHAKWIMDTDVFNEWMNEEDYEVDENKKGANFRQRISLKNEEAVRSPERKERKA
VGSAKKRKRSPSPPASESRKKSGKKGPGGLYGKRRGQKEDDEQEDLTKDMEDPTPVPNME
EVLLPKNVNPKKDSEHTPVKGGVVADLDEQEEETVAASGKEDEDPSRGDQSRIMDNGEDN
VTEQTNHIIIPSYAAWFDYNGIHVIERRALPEFFNGKNKSKTPEIYLAYRNFIIDTYRLN
PQEYLTSTACRRNLSGDVCAVMRAHAFLEQWGLVNYQVDADSRPMAMGPPPTPHFNVLAD
TPSGLVPLHMRTPQVPPAQQMLNFPEKMKEKPTDLQNFGLRTEIYSKKTLAKSKSASAGR
EWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDSSLGPL
AYQPVPFSQSGNPVMSTVAFLASVVDPRVAAAAAKAALEEFSRVREEVPLELVEAHIKKV
QEAAKALGKVDPTYGLENSCIAGTGSEEPEKPAADAPEEEKMETETAEPAQQEKVNNEVK
TEKESEAEASEKPEAEKKPVEEDAEPADKEKAPEEDTEDKENESAKEVDPAKKKAENDLS
EANVAMAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMD
REKEALEQQRQQLLNERQNFHMEQLKYAEMRARQQLEQQQQQQQQQQHSQNTQLQGGPAG
SNMGHIGAPNLPGMMGHQAQQQPPPYGVHQQMPPPHPSQPGQMPGPSSMMTGPPMPGRMM
PNIHPPPSGMPNMPGTMMGSRPPMAPNGMYPGPPTTTAAAASPYGRTDSSSHGNSGLGRT
IDKPLSRVLLTPQRRSTPTDSVFVFE
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaggcaggtgggcctgggtcttcccgggggctgcaacggcagcaataacgga
gagggaagcggcggcagattatccagcgcgggttcgaggcacaggaggaggcgtcgccgc
ggaggaggaggagcggcgggcggggaacgagaggacggaagcccggccgctgcagcacgg
gagcaaatccagtccagccgtcagtacccggggagccgcaccagggaagagacccgcagg
gaggccgaggaagaagacgaggaggacggagaggaggaggaagacgaaggggacgaggaa
gaggaggagtgtgagggagatttgcccggaggagaggaggaggaagccagtcgggacgcg
gactccatggcggcgggggcctcggctctgagtctggcccgtaagaaggacgggggtccg
gccagtaagttctgggacagccccgaaaccgtctctcagctggactcggtgcgagtgtgg
atcggcaaacactacaagaagtatgttcaggctgattcccctacaaacaaagccttggct
gccctggtatctcaactcctgcagttccaagaagatgcttttggaagacacgttaccaac
ccagccttcactaaactacctgttaagtgcttcatggatttcaaagcaggtggagctcta
tgtcacatactgggggctgcttacaaacacaggagcgatcaaggatggagaagatttgac
ttgcagaatccctccaggatggatcgcaacgtagaaatgtttatgaccattgaaaaaaca
ttgatgcagaacaactgcttgagcaggccaacagtctacctcgttccagatattgaactg
aagttggcgaacaaactgaaagatatagtgaaacgtcatcagggagcagtgacagaagag
aagctaaaggcctcccatcatgtgtaccctaatcctacctcactggatgatgatgagtgg
ttaagaccggttatgaaaaaggataagcaagttcaagtgcactggggatactatcctgat
agctatgatacctggattcctgcctctgatttagaagcagaagtggaagatgctcccatt
ccagaaaaaccatggaaagttcatgcaaagtggatcatggatacggatgtatttaatgaa
tggatgaacgaggaagactatgaggttgatgaaaataagaagggggctaatttccgccaa
agaatttcattaaagaatgaggaggctgtgcgaagtccagagaggaaagagcgaaaggct
gttggaagtgctaaaaagagaaaacgctctccttctcctccagcatctgaatctagaaag
aaatcaggcaagaaaggtccaggtggtctgtatggtaagcggcgaggacagaaggaagat
gatgagcaggaggatcttacaaaggatatggaggatccaaccccagtcccaaacatggaa
gaagtgttgctcccaaagaatgtaaacccaaagaaggacagtgaacacacacctgtaaag
ggaggagtggttgcagaccttgatgaacaagaggaagagacggttgctgctagtggaaag
gaagatgaggaccccagcaggggagatcagagcagaataatggacaacggtgaagataat
gtgacggagcagacaaaccacatcatcattccaagctatgcagcatggttcgactataac
ggcattcacgtgattgagcgtcgagcccttccagagttcttcaatggaaagaataaatca
aagacaccagagatatacctggcctaccgcaactttataatcgacacataccggctgaac
ccacaggaatatctgacgagcacagcttgccggaggaacctcagcggagatgtttgtgca
gtaatgagggcgcatgcctttctagagcagtggggtcttgtcaactaccaggtggatgca
gattcccggcctatggctatgggcccacccccaactcctcactttaacgtgcttgctgat
accccctctgggctggtgcctctacatatgaggactccacaggtacctcctgcccagcag
atgctaaatttccctgaaaaaatgaaagagaaaccaacagacctccaaaattttggctta
cgaacagaaatctattcaaagaagactttagcaaagagtaaatctgccagtgctggaagg
gagtggacagaacaggaaaccctgctgctcctagaggccctcgagatgtacaaagatgat
tggaacaaagtgtctgagcacgttggaagtcggactcaggatgaatgcatccttcacttc
cttaggctccctattgaagatccctatctggagaattcggattcctctctgggacccctg
gcctaccagcctgttccattcagccagtcgggcaaccctgttatgagtactgtggccttc
ctggcatctgttgtggacccaagagttgcagcagctgctgctaaagctgctttagaggag
ttttcaagagtacgagaggaggtgccactggagctggtggaggctcacattaaaaaggtg
caagaagcagccaaagcccttgggaaagtggatccaacctatggtctggaaaacagctgt
atagctggcactgggtcggaggagccagagaagcctgcagccgatgcccctgaagaggag
aagatggagactgaaacagctgaacccgcacagcaagagaaagtgaacaacgaggttaaa
actgaaaaggaaagtgaagcggaggctagtgagaaaccagaagcggagaagaagcctgtg
gaagaagatgctgagcctgcagataaagagaaagcaccagaggaagacactgaagacaaa
gagaatgaatccgcaaaggaagtcgaccctgcaaagaagaaagcagagaatgatctctcc
gaggctaatgttgcaatggctgcggctgctgctttggcttctgcagctacaaaggcaaag
catctggcagcagtggaagaacgcaagatcaagtctctggtggctttgttggtagaaact
cagatgaagaagctagagatcaagctgaggcattttgaagaacttgagaccatcatggac
agagaaaaggaagcactggaacaacagaggcaacagcttcttaatgagcgccagaacttt
cacatggaacagctgaaatatgctgagatgagagccagacagcaactggaacagcagcag
cagcagcagcaacaacaacaacacagccagaacactcaactccaaggggggcctgcaggg
tccaatatggggcatataggagcccctaatcttcctggaatgatggggcaccaagcacag
cagcagcctcccccttatggggttcaccagcagatgcctcctcctcacccctcacagcca
ggtcagatgccagggccaagttccatgatgactggacctcccatgccaggccgcatgatg
cccaatattcatccacctccttctggtatgcccaatatgcctggcactatgatgggatca
cgcccacccatggcacctaacggcatgtatcccggcccccccacaaccaccgcagcagcc
gcctccccctacggacggacagactcctcctcccacggcaactccggcctcggccgcacc
atagataaaccactcagccgagtacttttaaccccgcaaaggagatcgaccccgactgac
tctgtttttgtatttgagtga
DBGET
integrated database retrieval system
