Xenopus laevis (African clawed frog): 380048
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Entry
380048 CDS
T01010
Symbol
shmt1.L, shmt1
Name
(RefSeq) serine hydroxymethyltransferase 1 (soluble) L homeolog
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla00260
Glycine, serine and threonine metabolism
xla00630
Glyoxylate and dicarboxylate metabolism
xla00670
One carbon pool by folate
xla01100
Metabolic pathways
xla01200
Carbon metabolism
xla01230
Biosynthesis of amino acids
xla01240
Biosynthesis of cofactors
xla04981
Folate transport and metabolism
Module
xla_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
380048 (shmt1.L)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
380048 (shmt1.L)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
380048 (shmt1.L)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
380048 (shmt1.L)
Enzymes [BR:
xla01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
380048 (shmt1.L)
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GFIT
Motif
Pfam:
SHMT
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-GeneID:
380048
NCBI-ProteinID:
NP_001080356
Xenbase:
XB-GENE-966679
UniProt:
Q8AVC0
A0A974C114
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Position
9_10L:complement(121998583..122023549)
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AA seq
485 aa
AA seq
DB search
MADSTEINGHTLQETWESHNKMVLEPLDTNDPEVYEIIRKEKHRQRYGLELIASENFASC
AVLQALGSCLNNKYSEGYPGQRYYGGTEFVDEMERLCQKRALEVYGLEPQKWGVNVQPYS
GSPANFAIYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVHPETG
YIDYDRLEENARLFHPKMIIAGVSCYSRNLDYARMRRIADENNAVLMADMAHISGLVAAG
VVPSPFEHCDVVSTTTHKTLRGCRSGMIFYRKGVRSVDPKTGKETLYNYESLINQAVFPG
LQGGPHNHAIAGVAVALKQALSPEFKLYQKQVVSNCKALSLAIEELGYHVVTGGSDNHLI
LVNLRDKKTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGFNEEDFK
KVAQFIHRGIELTLEIQKSMNPGATLKDFKEKLASQDVHTPKILALRAEVEKFAGTFPIP
GLPDL
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcagattccactgagatcaatggccacacactccaggaaacatgggaatctcacaac
aagatggtactggaaccacttgacaccaatgatccagaggtgtatgagatcatccgaaaa
gagaagcacaggcagcggtacggcctggaactcatcgcttcagagaactttgcaagctgt
gctgttctgcaggctctgggctcctgtttgaataacaagtattccgagggctatcccggg
cagaggtactatggcggaacagagtttgtggatgagatggaacgtctttgccagaagagg
gctcttgaagtgtatggtctggaaccacaaaaatggggcgtcaacgtacagccgtactct
gggtctcctgctaactttgcaatttataccgccctggtggagcctcacgggaggattatg
ggtttggaccttccagacgggggacatctgacccacggcttcatgactgacaagaagaaa
atctcagccacgtcaatattttttgagtccatgccttacaaggttcaccctgaaacaggt
tatattgactatgacaggctggaggagaatgcccgtttgtttcaccccaagatgattatt
gcaggtgttagctgttactcccgtaacttggattacgctcggatgcgacgtattgcagat
gagaataacgccgttctcatggctgacatggcgcacattagcgggctcgtagcagccggg
gttgttccttccccatttgaacactgcgatgttgtatccaccaccacccataagactctg
cgcggctgccggtctggcatgatcttctaccggaaaggagtccgcagtgtggatccaaag
accggaaaggaaacgctctataactatgagagcttgattaatcaggctgtgtttcccggc
ctgcagggaggaccccataatcacgccattgcaggagtcgccgtcgccctgaaacaagct
ctatccccagaattcaaactctaccaaaaacaagttgtttccaattgcaaggccttgtcg
ttggctattgaagagctgggctaccatgttgtaacaggtggatctgacaatcacctaatt
ctagttaaccttcgtgataagaagactgatggaggcagggccgagaaggtgcttgaagct
tgctccattgcctgcaacaagaacacctgtccaggtgacaagagcgctttgcggcccagt
ggattgcggcttgggactccagccctgacctctcgtggattcaatgaggaagacttcaag
aaagtggcccagtttattcatagaggcattgagctgaccctggagattcagaagtcaatg
aatcctggagccacactgaaggatttcaaggagaaattggcctctcaagatgtccacacc
ccaaaaatcttggccctgagggccgaggtggagaaatttgctggtactttccctatccct
ggacttcccgatctgtga
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