KEGG   Xenopus laevis (African clawed frog): 380108
Entry
380108            CDS       T01010                                 
Symbol
arpc1b.L, arc41, arpc1b, arpc1b-a, arpc1b-b, arx-3and3n122, p40-arc, p41-arc
Name
(RefSeq) actin-related protein 2/3 complex subunit 1B-A
  KO
K05757  actin related protein 2/3 complex, subunit 1A/1B
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla04144  Endocytosis
xla04517  IgSF CAM signaling
xla04530  Tight junction
xla04810  Regulation of actin cytoskeleton
xla05100  Bacterial invasion of epithelial cells
xla05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:xla00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04517 IgSF CAM signaling
    380108 (arpc1b.L)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    380108 (arpc1b.L)
  09144 Cellular community - eukaryotes
   04530 Tight junction
    380108 (arpc1b.L)
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    380108 (arpc1b.L)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    380108 (arpc1b.L)
   05100 Bacterial invasion of epithelial cells
    380108 (arpc1b.L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:xla04131]
    380108 (arpc1b.L)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:xla04812]
    380108 (arpc1b.L)
Membrane trafficking [BR:xla04131]
 Others
  Actin-binding proteins
   Arp2/3 complex
    380108 (arpc1b.L)
Cytoskeleton proteins [BR:xla04812]
 Eukaryotic cytoskeleton proteins
  Actin filaments / Microfilaments
   Actin-binding proteins
    Arp2/3 complex
     380108 (arpc1b.L)
SSDB
Motif
Pfam: Beta-prop_EML_2 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40 WD40_CDC20-Fz Beta-prop_WDR5 WD40_Prp19 Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_WDR35_TULP_N Beta-prop_WDR3_2nd Beta-prop_WDR19_1st Beta-prop_Aladin Beta-prop_EML Beta-prop_HPS5 WD40_Gbeta Beta-prop_WDR75_1st EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st eIF2A PEP5_VPS11_N Rax2 Beta-prop_IFT122_1st RMC1_N WDR90_beta-prop_4th Beta-prop_SPT8
Other DBs
NCBI-GeneID: 380108
NCBI-ProteinID: NP_001080416
Xenbase: XB-GENE-490414
UniProt: Q7ZXD5
LinkDB
Position
9_10L:complement(95689281..95705879)
AA seq 369 aa
MAYHSFLLEPITCHAWNKDATQIAFCPNSHDVHIYKKDGDKWSKIHELKEHNGHVTGIDW
APESNRIVTCGTDRNAYVWTLKNNVWKPTLVILRINRAARCVKWSPKENKFAVGSGSRLI
SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSSDFKSRIFSAYIKEVEERP
APTPWGSKMPFGELMFESSSSCGWVHSVCFSHSGDRMAWVSHDSTICISDATKKMRVTSL
ITDTLPLLCVTFITENSLVAAGHDCFPVLYIYDEAQGTLSFGGKLDIPKQSSQRGMTARE
RFQNLDKKASSDTNNITLDSLHKNSISQLSVLSGGKAKCSKFCTTGLDGGMCIWDVKSLE
SAMKDLKIK
NT seq 1110 nt   +upstreamnt  +downstreamnt
atggcctatcacagttttcttctggagcccattacctgtcatgcttggaacaaagatgca
actcaaatcgccttttgtccaaatagtcatgatgttcacatttacaagaaggatggagat
aaatggagcaaaatccatgaactgaaggaacataatggacacgtcacaggcattgactgg
gctcctgagagtaaccgcattgtaacttgtggtacagatcgtaatgcctatgtgtggacc
ctaaaaaacaatgtgtggaaacctactctggtcatccttaggattaaccgtgctgcacgt
tgtgtaaagtggtcacctaaggagaacaagtttgcagtgggcagtggatccaggctcatt
tccatctgctactttgagcaagaaaatgactggtgggtgtgtaagcacatcaagaaacca
atacgttcaactgtcctgagtctggattggcatccaaacaatgttcttctggcagctggg
tccagtgattttaagagcaggatcttttcagcttatataaaagaagtggaagagcgccct
gcccccaccccatggggctccaaaatgccctttggggagttaatgtttgagtccagcagc
agctgtggatgggtgcatagtgtctgcttttcccatagtggagaccgcatggcttgggtg
agccatgatagcacaatttgcatttctgatgccaccaaaaagatgagagtaacctccttg
attacagacactttgccactcttgtgtgtgacctttatcactgagaacagtctggtggct
gctggtcatgactgttttccagttctgtacatctatgatgaagctcaggggactctgagt
tttggggggaaactagatatccccaagcagagttcccagagaggaatgactgcacgtgag
agatttcaaaacctggacaagaaggccagttccgataccaacaacattaccctggactcc
ttgcacaagaacagcatcagtcaattatctgtgctgagtggtgggaaggcaaagtgttcc
aaattctgtaccactggcttggatggaggaatgtgcatctgggacgtcaagagcctggaa
tctgcaatgaaagatctgaagattaagtga

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