Xenopus laevis (African clawed frog): 380114
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Entry
380114 CDS
T01010
Symbol
fxr1.S, fxr1, fxr1-a, fxr1-b, fxr1h, Fxr1p, somi36, xfxr1, xFxr1p
Name
(RefSeq) fragile X mental retardation syndrome-related protein 1 homolog B
KO
K15516
fragile X mental retardation protein
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
380114 (fxr1.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
380114 (fxr1.S)
Factors involved in mRNA localization
Other mRNA localization factors
380114 (fxr1.S)
mRNA cycle factors
Stress granule specific factors
380114 (fxr1.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXMRP1_C_core
FXR_C1
KH_9
Tudor_FRX1
FXR_C3
KH_1
Agenet
KH-I_KHDC4-BBP
Tudor_2
Motif
Other DBs
NCBI-GeneID:
380114
NCBI-ProteinID:
NP_001080422
Xenbase:
XB-GENE-1004715
UniProt:
Q7ZTQ5
A0A974CS57
LinkDB
All DBs
Position
5S:complement(94958225..94989355)
Genome browser
AA seq
675 aa
AA seq
DB search
MEDLTVEVRGSNGAFYKGFIKDVHEDSLTVVFENNWQPERQVPFNEVRMPPLPDIKKEIT
EGDEVEVYSRANDQEPCGWWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQNKS
VTKNSFFKCTVDVPEDLRESCSNENVHKEFKKAVGACRVYFHAETNQLIILSASESTVKR
VNILSDMHLRSIRTKLMLMSRNEEATKHLECTKQLASAFHEEFDVREDLMGLAIGTHGSN
IQQARKVPGITAIELDEDSGTFRIYGESEEAVKKARSYLEFVEDFIQVPRNLVGKVIGKN
GKVIQEIVDKSGVVRVRIEGDNETKLPREDGMVPFVFVGTKENIGNVQVLLEYHIAYLKE
VEQLRMERLQIDEQLRQIGMGFRPSSRGTEKEKGYVTDESAASSVRGSRSYSGRGRGRRG
PNYTSGYGTNSELSNTSETESERKEELSDWSLAGEDEREGRQQRDSRRRPGGRGRSGSAG
RGRGGSRGGKSSISSVLKDPDSNPYSLLDNTESDQTADTDASDSHHNANRRRRSRRRRTD
EDSSLMDGMTESDNASVNENGLDDSEQKPQRRNRSRRRRFRGQAEDRQPVTVADYISRAE
SQSRQRNLPKETLENGKKEKVKDVIEEHGPSEKVINGPRATSADRALKPQTTPTERNNAS
CQDGSKQEAILNGVS
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggaggacctgacggtggaagtgcgcggctctaacggagctttttacaagggatttatc
aaggatgtacatgaagattccctcaccgttgtttttgaaaacaactggcaaccagagcgt
caggtgcctttcaatgaggtccggatgcctcctctccctgatattaaaaaggaaattact
gaaggagatgaggttgaggtgtactcccgagctaatgaccaagaaccttgtggatggtgg
ttggcaaaagtacgaatgatgaaaggagagttctatgttattgaatatgctgcttgtgac
gctacctacaatgaaattgtaacatttgaacggctgcgacctgtaaaccagaataaaagt
gtaacaaagaactctttcttcaaatgtacagtagatgtccctgaagatttaagagaatcg
tgttctaatgaaaacgtgcataaggaattcaagaaagctgtaggagcctgccgagtttat
tttcatgcagaaactaatcagctaataatactgtctgcaagcgaatcaactgtaaagaga
gtaaacatattgagcgacatgcatttgcggagtatccgcaccaaactgatgcttatgtca
agaaatgaagaggccacaaaacatttagaatgtacaaaacagcttgcttcagcatttcat
gaagaatttgatgttcgggaagatttaatgggcctggcaatagggacccatggaagtaat
atccaacaagctaggaaggttccaggtataactgctattgagttagatgaagatagcggc
acgtttcgaatttatggggagagtgaagaagctgttaaaaaagcaaggagttacctggag
tttgtggaagatttcattcaagtacctagaaatcttgtaggaaaagtaattggcaaaaat
ggaaaagtaattcaagagatcgttgataaatctggagtagtaagagtcagaattgaggga
gacaacgaaacaaagttacctcgtgaagatggcatggttccatttgtttttgttggaacc
aaagagaacattggtaatgtacaggttcttctggagtaccacattgcatatttaaaggag
gtagagcagcttcgtatggaaagactacagatagatgagcaacttcgtcagattggtatg
ggcttcagaccttctagcagaggaacagaaaaagagaaaggatatgtgactgatgaaagt
gctgcttcatctgtccgaggaagcaggtcttacagtggcaggggcagaggtcgtaggggc
ccaaattatacctctggctatggtacaaattctgagctttccaatacttctgagactgaa
tcagaaagaaaagaggaactgagtgactggtcactagctggtgaagacgaacgtgaaggc
cgccaacagcgtgacagccgaaggcgccctgggggtagagggcgtagtggatctgctggt
cgaggtcggggaggatcaaggggtggaaagtcttctatcagctctgtgcttaaggatcct
gacagcaacccatacagcttacttgacaacacagaatctgaccagaccgctgacacagat
gcaagtgactctcaccacaacgcaaaccgtcgaaggagatcacggaggaggaggactgat
gaggattcctctttaatggacggaatgactgagtctgacaatgcatcagttaatgaaaat
ggcttggatgatagtgagcaaaaaccccagcgacgcaatcgtagccgcaggcgtcgcttc
aggggtcaggcagaagatagacagccagttacagtcgctgactatatctctagagcagaa
tctcaaagccgacagcgaaatctacctaaagaaactttggaaaatggcaaaaaggaaaag
gtgaaggatgtaattgaagagcacggaccttcagaaaaagtcattaatggcccaagagct
acttctgctgacagggctttaaagccacagaccacacccacagaaagaaacaatgcaagc
tgtcaagatggaagtaaacaagaagccatactgaatggggtgtcttaa
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