Xenopus laevis (African clawed frog): 380261
Help
Entry
380261 CDS
T01010
Symbol
ddx42.L, ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
380261 (ddx42.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
380261 (ddx42.L)
Enzymes [BR:
xla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
380261 (ddx42.L)
Spliceosome [BR:
xla03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
380261 (ddx42.L)
Complex B
380261 (ddx42.L)
Complex C
U2 SnRNP specific factors
380261 (ddx42.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
380261
NCBI-ProteinID:
NP_001080569
Xenbase:
XB-GENE-972673
UniProt:
Q7ZY47
LinkDB
All DBs
Position
9_10L:complement(6216675..6231874)
Genome browser
AA seq
947 aa
AA seq
DB search
MNWNKGGSGNKRGFGFGGFAISTGKKEEPKLPQVSHSAFQSASSKYGSTSNQLPSFYKIG
SKRANFDEENSYFDDEEEDSSNVDLPYIPAENSPTRQQLRSKTDSDSEEDPLEAFMAEVE
DQAAKDMRKLEERDKEKANARGIRDDIEEEDDQEAYFRYMAENPTAGLVPEEEEDNLEYD
SDGNPIAPTTKRIIDPLPPIDHTEIEYPPFEKNFYEEHEAITSQTPQQITELRHKLNLRV
SGAAPPRLCSSFAHFGFDEQLLHQIRKSEYTQPTPIQCQGIPVALSGRDMIGIAKTGSGK
TAAFIWPILVHIMDQKELQPADGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGG
GSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRS
IANHVRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQVVEILPSGPE
KWTWLTRRLVEFTSTGSVLVFVTKKANAEELAANLRQDDHPLGLLHGDMDQSERNKVISD
FKKKSIPVLVATDVAARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLT
SKESNFAGDLVRNLEGANQYVSKELLDLAMQNSWFRKSRFKAGKGKKLNIGGGGLGYRER
PGLGAESSEHGTGGNVMSNYEAFKPSGGAMGDRLSAMKSAFQSQYKNHFVAASASTQKTG
TSSINSGAWTSAGSLSSVPSAHPPSGKLPAEAAPPPVHTAMLGFTSSGTLSSIPTGYPAN
ISSASYPAATLFGARDGASAGTESGGRERHSDSKGRHGDSHRPSDREGYRHGDGHRHSSS
SRHGERNGGEGRRESSRDGRRDSSRDGESRRDGSRDGGEGRRESSRDGEGRRESSRDGDG
RRESSGDGRREVVGDDGDSRKEGTREAKTDTFAIPVPPKRKKSRWDS
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaagggaggatcaggcaacaagcgtggatttgggtttggaggatttgcc
atctccactgggaaaaaggaggagcccaagttgccccaagtctcacacagtgcctttcag
tcggcgtcctcaaagtatggctccactagtaaccagctcccctcgttctacaaaattggc
tccaagcgggcgaactttgacgaagagaattcttattttgatgatgaagaggaagactcc
agtaatgtagacctgccctacattccagctgagaattccccgaccaggcagcagctccgt
tccaagacggattccgacagtgaagaggatcctctggaggctttcatggcagaagttgag
gatcaagctgccaaagatatgaggaaactggaggagagagacaaagagaaagcgaatgcc
aggggtatccgtgacgacattgaggaagaagatgatcaggaagcttatttccgatacatg
gctgaaaatccaaccgccggccttgttccggaagaggaggaagacaatctggagtatgac
agtgatggcaatcccattgccccgactacaaagcgcattatcgaccctctgcctcctatt
gatcacacagaaattgagtatccaccttttgagaagaacttctatgaagaacatgaggca
atcacctctcagaccccacagcagatcacagagctgagacacaagctaaacctgcgggtt
tctggggcagcaccaccacgtctttgcagcagttttgctcactttggatttgatgaacag
ctactgcaccagatccggaagtcagaatacactcaacccacgcccatccagtgtcaggga
atcccagtggccctgagtggacgagacatgatcggcattgcaaagactggaagtggtaag
actgcagcatttatttggccaatcctagtgcacatcatggaccagaaggaactgcagccg
gcggatgggcccattgctgtgattgtgtgccccacccgtgagctgtgccagcagatccac
agtgaatgcaagcggtttgggaaggcgtataatctgcgctctgtagcagtgtatggaggc
ggcagcatgtgggaacaggcaaaagccctacaggaaggggcagaaatagttgtgtgtact
ccgggtcgacttattgaccatgttaagaagaaggctaccaatctccagcgtgtcacatac
ctggtgtttgatgaagctgaccgtatgtttgacatggggtttgaataccaggttcgatcc
attgcaaaccacgtgcgaccggatagacaaactctcttattcagcgccacctttcgaaag
aagattgaaaagttggccagagacattctagtcgatcctatccgtgtggttcagggcgat
attggagaggcaaatgaagacatcactcaggtggtagagattttgccctctggcccagaa
aagtggacgtggctaacacgcagactggtggagtttacatcaactggaagtgtcttggtg
tttgtcaccaaaaaggccaatgcagaggagctggctgccaatttacgacaagacgaccat
cccctgggtcttctccatggtgatatggaccagagtgagagaaacaaggtcatttctgat
ttcaagaagaaatccatccctgtcctggttgctacagatgtggcagcccggggcttggat
attccatcaatcaagactgtggtaaactatgacgtggcacgagacatcgacacgcacact
catcgcattggtcgaacaggcagagcgggtgaaaagggagtggcctatactctgttaaca
tccaaagagagcaactttgctggagacttggtgagaaacctcgagggtgccaatcagtac
gtgtcaaaagagctgctggatctggccatgcagaattcctggttccgtaagtctcgcttc
aaggctggaaagggcaagaagttaaacattgggggtggaggccttggataccgtgaaaga
cccgggctaggagctgaaagctcggaacatggcactggtggaaatgtgatgagcaattat
gaagcatttaaaccttcaggaggtgccatgggagacaggttatctgccatgaagtctgct
tttcagtctcagtacaagaatcattttgttgctgccagtgctagcacccagaaaactggt
acgtcttcaattaactctggagcttggaccagtgctgggagtttaagttctgttcccagt
gcacatccacctagtgggaaactccctgcagaagctgctccaccaccagttcacacagcc
atgctaggctttaccagcagtgggactcttagcagcattcccactggttatccagcaaac
atcagcagtgccagctacccagcagctacattgtttggtgcccgcgatggtgcaagtgca
ggtactgaaagtggtggtagagagcgacatagtgacagcaaaggacgccatggggacagc
catcgtcctagtgatcgggaaggatatcggcatggagatggacatcgacactcaagcagt
agtcgtcacggagagagaaatggaggcgagggaaggagagaaagctcccgagatgggcga
agagacagctcgcgggatggagaaagtcgtagagatggctcacgagatgggggcgagggc
aggcgcgagagctctagggatggggagggacgtagagagagttctcgagatggagatggg
aggagagagagttcaggagatgggagaagagaggtagtaggggatgatggagacagcagg
aaagagggcaccagggaggcaaaaactgacacctttgccatacccgtacctcccaagcgt
aagaagagccgatgggacagttaa
DBGET
integrated database retrieval system
