Xenopus laevis (African clawed frog): 380419
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Entry
380419 CDS
T01010
Symbol
col1a2.L, col1a2
Name
(RefSeq) collagen type I alpha 2 L homeolog precursor
KO
K06236
collagen type I alpha
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04510
Focal adhesion
xla04512
ECM-receptor interaction
xla04518
Integrin signaling
xla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
380419 (col1a2.L)
04518 Integrin signaling
380419 (col1a2.L)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
380419 (col1a2.L)
09142 Cell motility
04820 Cytoskeleton in muscle cells
380419 (col1a2.L)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xla00536
]
380419 (col1a2.L)
Glycosaminoglycan binding proteins [BR:
xla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
380419 (col1a2.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
380419
NCBI-ProteinID:
NP_001080727
Xenbase:
XB-GENE-493268
UniProt:
Q801M5
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All DBs
Position
6L:32779143..32817005
Genome browser
AA seq
1346 aa
AA seq
DB search
MLSFVDMRTVLLLAVTLYLATCQSVNEVQRGPAGPPGRDGIDGEPGLPGPPGPPGLGGNF
AAQYDSSKSGGEPGPAGLMGPRGPPGAPGSPGAQGFQGHAGEPGEPGQPGPVGSKGPTGP
PGKSGEDGHPGKSGRPGERGTVGTQGARGFPGTPGLPGFKGIRGHNGLDGQKGAPGVAGV
KGETGANGENGSPGQAGARGLPGERGRGGPPGPAGSRGSDGSGGPTGPAGPIGSAGAPGL
PGAPGAKGEIGSAGNSGPTGAAGPRGEPGPPGSLGPVGPAGNPGANGVNGAKGAAGLPGV
AGAPGLPGARGIPGPPGPSGPAGARGLSGDPGVSGGKGDTGAKGEPGSSGPSGPAGPSGE
EGKRGPNGEAGSSGPAGNAGIRGVPGTRGLPGPDGRAGGMGAPGSRGASGPPGTRGPNGD
AGRPGEPGLLGARGLPGLSGSPGPAGKEGLAGPQGIEGRSGPAGPSGPRGEPGSIGFPGP
KGPSGEPGKNGDKGNQGPAGNRGAPGPDGNNGAQGPPGIVGNNGDKGEQGPAGAPGFQGL
PGPGGAAGELGKPGERGAPGDFGPAGPAGTRGERGTPGESGAAGPFGPLGPRGPTGAPGT
DGAKGEPGVAGLNGALGPAGPGGIPGERGAAGVPGSKGEKGDAGHAGEYGNQGRDGSRGP
AGASGAPGPAGAAGDRGESGPAGPAGIAGPRGTPGERGEAGPAGTTGFAGPPGAAGHTGV
KGERGPKGPKGEGGSPGALGAVGSHGPAGPNGPAGTTGPRGDGGAPGATGFPGPAGRTGA
PGPAGTVGPSGPTGHPGKDGPRGTRGDSGPVGRPGEQGIGGPQGLSGEKGPSGESGPAGA
PGASGPSGVLGSLGFSGLPGSRGERGTPGGSGSNGEPGPSGPPGAAGARGPSGPMGSPGP
NGVPGEAGRDGNPGNDGPSGRDGLPGNKGERGYPGNSGPAGSLGASGAPGAVGPAGKSGN
RGEPGPVGPAGVVGPAGPRGPAGIQGGRGDKGEAGEKGARGLDGRKGHNGLQGLPGPAGS
PGETGPAGTNGPSGPRGPAGPSGPPGKEGRSGHSGTIGPVGLRGPAGHQGPAGPPGPPGL
PGLPGSSGGGYDGGFGGEFFRADQPSRRPKDYEVDATLKSLNSQIETIMTPEGSKKNPAR
TCRDLRLSHPDWSSGFYWIDPNQGCTSDAIRVFCDFSTGETCIHANPESISQKNWYTSKT
TDRKHVWFGETINGGTQFEYNDEGITSKDMATQFAFMRLLANHASQNITYHCKNSIAYMD
GQTGNLKKAILLQGSNDVELRAEGNSRFTFSVLEDSCTQHTGEWGRTVIEYRTNKPSRLP
ILDIAPLDIGGDDQEFGLDIGPVCFK
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatatgcggactgtgctgctactcgcagtcaccctatacctagca
acatgccaatctgtaaatgaggttcagaggggaccagcaggtcctccaggtagagacggc
attgatggagaaccaggcttacccggaccccccggcccccccggccttggcggaaacttt
gctgctcagtatgactcatccaaatctggcggagaacctggccctgctggtttaatggga
ccaagaggaccccctggagcacccggatcccctggtgctcaaggcttccaaggacatgcc
ggtgaacctggtgaacctggccaacctggtcctgtaggatctaaaggtccaactggtccc
cctggaaaatccggtgaagatggtcaccctggcaaatctggaagacccggtgagagagga
actgttggaactcaaggtgcacgtggttttcctggaactcctggtctccctggatttaaa
ggaattaggggtcacaatggtctggatggtcagaagggagccccaggtgttgcaggtgtc
aagggagaaactggtgctaatggtgaaaacggatcccccggtcaggctggtgcacgtggt
ctcccaggtgaaagagggcgtggtggacctcctggcccagctggttcccgtggaagcgat
ggcagtggaggccccaccggcccagctggtcctattggttctgccggagctcccggtctt
cctggtgctcctggtgcaaagggtgaaattggatctgcaggaaacagtggtcccactggt
gctgctggtcctagaggtgaaccaggtccacctggttctcttgggcctgttggacctgct
ggtaaccctggtgctaatggagtcaacggtgctaaaggtgcagctggtctccctggtgta
gctggtgctcctggtttgcctggtgcacgtggaatccccggtcccccaggaccttctggt
ccagctggagctagaggactttctggtgatcctggtgtttctggtggaaaaggagacact
ggtgccaagggcgaacctggttcttctggtccctctggtcctgctggtccatctggagaa
gaaggcaagagaggtcccaacggagaagctggatcatctgggcctgctggcaatgctgga
attagaggtgttcctggaactcgtggtctgccaggccctgacggtagagctggtggaatg
ggtgctcctggtagccgtggtgcttctggtcctcctggtacaagaggtccaaatggtgat
gctggacgccctggagagcctggtcttcttggtgcaagagggcttcctggtttatctggc
agccctggtcctgctggcaaggaaggtcttgctggtcctcaaggtattgagggtcgtagt
ggtcctgctggtccatctggcccaagaggtgaacctggtagcattggattccctggtccc
aaaggtccatctggtgagcctggaaagaatggagataagggaaaccaaggtcctgctgga
aacagaggagcccctggacccgatggtaacaatggagctcaaggacccccaggaattgtt
ggcaataatggagacaaaggtgaacaaggtcctgctggtgccccaggcttccagggtctt
ccaggccccggtggtgctgctggagaacttggcaaacccggagaaagaggtgctcctggt
gactttggtcctgctggcccagctggcacaagaggtgaacgtggtactcctggagagagt
ggtgctgcaggtccatttggacctcttggaccccgaggcccaactggtgcacctggaact
gatggagccaagggtgaacccggtgtagctggattaaatggtgctcttggaccagctggc
cctggtggaatcccaggagagagaggtgcagctggtgttcctggatcaaagggagagaag
ggtgacgctggccatgctggagaatatggtaaccaaggaagagatggttctcgtggtcct
gctggtgcttccggtgctcctggtcctgctggtgctgctggtgatcggggtgaatctggc
cctgctggacctgctggtattgccggtcctcgtggaactcctggtgaacgtggtgaggct
ggtccagctggtactactggttttgctggtcctcctggtgcagctggtcacactggtgtc
aagggagaaagaggaccaaaaggaccaaagggtgaaggtggttctcctggcgctcttggt
gcagttggctctcacggacctgcaggtcccaatggtccagctggcactactggtccccga
ggtgatggtggtgctcctggtgcaactggtttccctggtcctgctggaagaactggtgct
cctggccctgctggtactgttggtccttctggccctacaggccaccctggcaaagatggt
ccaagaggtactcgtggtgacagcggaccagttggccgccctggagaacaaggtatcggt
ggtccacaaggtttgagtggagagaagggtccatctggtgaatctggtcctgctggtgct
cctggcgcttctggtccttctggtgtccttggttctcttggtttctctggtcttccagga
tcaagaggtgaacgtggtacccctggtggctctggatctaatggtgagccaggtccttct
ggtcctccaggtgctgctggtgctcgtggtccctctggccccatgggctctcccggtcca
aatggtgttcctggtgaagctggccgtgatggcaatcctggtaatgatggtccatctggt
cgtgatggtctgcctggaaataagggagagcgtggctatcctggaaacagtggccctgct
ggatctcttggtgcttctggagctccaggagctgttggccctgctggaaaatcaggaaac
cgtggggaacctggtcctgttggtcctgctggagttgttggtcctgctggtcccagaggc
ccagctggaattcaaggtggtcgtggtgacaagggtgaagctggtgagaagggagctaga
ggtttggatggacgcaaaggacataatggtttacaaggtctccctggtcctgctggttct
ccaggagaaacaggtcctgctggtaccaatggtccatctggcccacggggtccagctggc
ccatccggccctccaggcaaagaaggacgttctggacacagtggtactatcggtccagtt
ggtcttcgtggtcctgctggtcaccaaggtcctgctggtcctcctggaccacctggtctt
cctggtcttcctggctcatctggtggtggatatgatggtggctttggtggtgaattcttc
agagctgaccagccttctcgcagaccaaaggattatgaagtggatgccactctgaaatct
ttgaacagccaaatcgagacaatcatgaccccagaaggctcaaagaagaaccctgcccgc
acttgccgtgacttaagactcagccacccagactggagcagtggattctactggattgac
cctaaccaaggctgcacatctgatgccatcagagtattctgtgatttctccactggtgag
acctgcatccatgccaacccagagagcatttcacagaagaactggtacactagcaagacc
acggacaggaagcatgtatggtttggtgaaaccatcaatggtggcacacagtttgaatac
aatgacgaaggaatcacttccaaggacatggccactcagtttgctttcatgcgtttgttg
gctaatcacgcatctcagaatattacctaccactgcaagaacagcattgcctatatggat
ggacagactggaaacctgaagaaggccatcttgctacaaggatccaatgatgttgaacta
cgcgcagagggcaacagcagattcacttttagcgtccttgaagatagttgcacgcaacac
acaggtgaatggggaagaacagtcatagaatacagaacaaacaagccatctcgcttaccc
atccttgacattgcacctttggacattggtggtgatgaccaagagtttggtttggacatt
ggcccagtgtgtttcaaataa
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