KEGG   Xenopus laevis (African clawed frog): 380469
Entry
380469            CDS       T01010                                 
Symbol
rbm22.S, cg14641, rbm22
Name
(RefSeq) pre-mRNA-splicing factor RBM22
  KO
K12872  pre-mRNA-splicing factor RBM22/SLT11
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    380469 (rbm22.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xla03041]
    380469 (rbm22.S)
Spliceosome [BR:xla03041]
 Complex B
  Other components
   Prp19-related factors
    380469 (rbm22.S)
 Complex C
    380469 (rbm22.S)
SSDB
Motif
Pfam: STL11_N zf-CCCH_RBM22 RRM_1 Torus zf_CCCH_4 Nup35_RRM_2 RRM_occluded zf-CCCH_2 zf-CCCH RRM_3 zf-CCCH_4 RRM_YTH1 zf-CCCH_3 zf-CCCH_10 RRM_PARP14_3 zf-CCCH_12 zf-CCCH_PARP12
Other DBs
NCBI-GeneID: 380469
NCBI-ProteinID: NP_001080776
Xenbase: XB-GENE-971204
UniProt: Q7ZXB5 A0A974CKB3
LinkDB
Position
6S:complement(75175115..75188573)
AA seq 417 aa
MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
VRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQVRDTGVSLKDEMPRSDVNKEYYTQN
MEREIANSDGTRPVGALGKATSSSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRFYGINDPVADKLLKRASTMPRLDPPEDKSITTLYVGGLG
DTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQSAETAAEKSFNKLIVNGRRLNV
KWGRSQAARGKEREHDGSGDPGMKFEPVPGLPGALPPPPTEEESSANYFNLPPNGSAALV
NISLPPPPGLSGPPPGFGPHMFPPMAPPPFLRAPGHIHYPSQDPQRMGAHAGKPSSG
NT seq 1254 nt   +upstreamnt  +downstreamnt
atggcgacgtcgctcggatcaaacacgtacaatcggcaaaactgggaagacgcggacttt
cccattctgtgtcagacatgtcttggcgaaaatccatacatcaggatgaccaaagaaaaa
tatggaaaggagtgcaagatttgtgctcgtccattcactgtttttcgctggtgtcctggt
gttcgaatgcgctttaagaagacagaagtgtgccaaacatgcagcaagttgaaaaatgtc
tgtcagacctgcttgcttgaccttgaatatggactgccaattcaagtacgagatactggg
gtatccctaaaagatgagatgcctagatctgatgtgaataaagaatattacactcagaac
atggaaagagagattgcaaactctgatgggacaagacctgttggagctctgggcaaagct
acatctagcagtgacatgctgctaaaacttgctcgcaccaccccttactacaaacgcaac
cgaccacatatctgttctttctgggtgaaaggagagtgtaaaagaggagaggaatgtcca
tacaggcatgagaaacccactgatcctgatgatcccctcgcagaccagaatattaaagac
cgtttctatggtattaatgaccctgtcgcagacaaattattgaaaagggcctccacaatg
cctcgtctggatccaccagaggacaagagcatcacaactctttatgttgggggtttggga
gacaccatcagtgaatcagaactccggaatcatttctaccagtttggtgaaataagaaca
attactgtagttcaaaggcagcaatgcgcatttattcagtttgccactagacagtcagca
gagacggcagcagagaaatcctttaacaagttaattgtgaatggacgtcgactcaatgtg
aagtggggaaggtctcaggcagcccgaggcaaagagagggaacatgatgggtccggtgat
cctggaatgaaatttgagcctgttcctggacttcctggagccctgccacccccaccaaca
gaagaagaatcttcagccaactactttaacctgcctcctaatgggtcagcagctctcgtg
aacatttccctcccacctccacctggcttaagtgggccacctccaggatttggcccacac
atgttcccacctatggcacctcctccattccttcgtgctcctgggcatatccactatcca
tctcaagaccctcaacggatgggagcacatgcaggaaaacctagtagtggttaa

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