Xenopus laevis (African clawed frog): 380530
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Entry
380530 CDS
T01010
Symbol
hmgb1.L, hmg-1, HMG1, hmg3, hmgb1, sbp-1
Name
(RefSeq) high mobility group box 1 L homeolog
KO
K10802
high mobility group protein B1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03410
Base excision repair
xla04140
Autophagy - animal
xla04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
380530 (hmgb1.L)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
380530 (hmgb1.L)
09143 Cell growth and death
04217 Necroptosis
380530 (hmgb1.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xla03036
]
380530 (hmgb1.L)
03400 DNA repair and recombination proteins [BR:
xla03400
]
380530 (hmgb1.L)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xla04147
]
380530 (hmgb1.L)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
380530 (hmgb1.L)
DNA repair and recombination proteins [BR:
xla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
380530 (hmgb1.L)
MMR (mismatch excision repair)
Other MMR factors
380530 (hmgb1.L)
Exosome [BR:
xla04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
380530 (hmgb1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
HMG_box_5
DUF4023
Motif
Other DBs
NCBI-GeneID:
380530
NCBI-ProteinID:
NP_001080836
Xenbase:
XB-GENE-1001213
UniProt:
Q7SZ42
A0A974DQA5
LinkDB
All DBs
Position
2L:163443029..163452091
Genome browser
AA seq
211 aa
AA seq
DB search
MGKGDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMSAKEKSKF
EDMAKADKVRYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGS
TIGDIAKKLGEMWNNTATDDKLPFERKAAKLKEKYEKDVAAYRAKGKPEPAKKAPAKPEK
AKKKEEDDEDDDEEDEDEEDEEEEEEEDDDE
NT seq
636 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaggtgatcctaagaagccaagaggaaaaatgtcctcatatgcttactttgtg
caaacttgcagagaagagcacaagaaaaagcaccctgatgcctctgtaaattttgcagag
ttttctaagaaatgctcagaaaggtggaagactatgtctgctaaggaaaagtcaaagttt
gaagatatggcaaaagctgacaaagttcgctatgagagagaaatgaaaacttatatacca
cccaaaggggaaacaaaaaagaagtttaaggaccctaatgcaccaaagagaccaccttca
gcgttcttcttattctgctctgaattccgtccaaaaatcaaaggggagcaccctggttcg
actattggcgacatagcaaaaaaactgggagaaatgtggaataacactgctacagatgac
aagcttcctttcgaaaggaaagctgccaagctgaaggagaaatatgaaaaggatgttgca
gcatatagggctaagggaaagccagaacctgcaaaaaaagctccagctaaaccagaaaaa
gccaagaagaaggaggaggatgatgaggatgacgacgaagaggatgaagatgaagaagac
gaagaggaggaggaagaggaggatgatgatgaataa
DBGET
integrated database retrieval system
