Xenopus laevis (African clawed frog): 380586
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Entry
380586 CDS
T01010
Symbol
prpf19.L, nmp200, prpf19
Name
(RefSeq) pre-mRNA processing factor 19 L homeolog
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
xla04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
380586 (prpf19.L)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
380586 (prpf19.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
380586 (prpf19.L)
04121 Ubiquitin system [BR:
xla04121
]
380586 (prpf19.L)
03400 DNA repair and recombination proteins [BR:
xla03400
]
380586 (prpf19.L)
Enzymes [BR:
xla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
380586 (prpf19.L)
Spliceosome [BR:
xla03041
]
Complex B
Other components
Prp19 complex
380586 (prpf19.L)
Complex C
Prp19-CDC5 complex
380586 (prpf19.L)
Ubiquitin system [BR:
xla04121
]
Ubiquitin ligases (E3)
U-box type E3
380586 (prpf19.L)
DNA repair and recombination proteins [BR:
xla03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
380586 (prpf19.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
NBCH_WD40
U-box
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_SCAP
Beta-prop_RIG_2nd
PEP5_VPS11_N
PROPPIN
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_DCAF12
zf-Nse
Ge1_WD40
Beta-prop_WDR35_TULP_N
RMC1_N
Cytochrom_D1
BCAS3_WD40
Beta-prop_Nup120_160
ATG16
Motif
Other DBs
NCBI-GeneID:
380586
NCBI-ProteinID:
NP_001080892
Xenbase:
XB-GENE-6253412
UniProt:
A0AA97PZ83
A0A8J0PRA2
LinkDB
All DBs
Position
7L:complement(64291689..64313000)
Genome browser
AA seq
504 aa
AA seq
DB search
MSLTCYISNEVTDRPCISPVSGHIFDRRLIEKYLAENGTDPVTNQPLSEDQLIDIKVAHP
IRPKPPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGISVPQASPMPPTGAAGSAEAMELGELVGMSAEIIQKLQDKA
TVLTTERKKRGKTVPEDLVKPEELSKYHQVSSHVGLHSASVPGILALDLCPTDTNKTLTG
GADKSVVVFDALSQQILATLKGHTKKVTSVVFHPSQELVFSSSPDSTIRVWSVPDASCAQ
VLRAHEGAVTGLSLHATGDYLLSCSDDQYWAFSDVHVGRVLTKVTDESSGCALTCAQFHP
DGLIFGTGTVDSQIKIWDLKERSNVANFPGHSGPVSCIAFSENGYYLATAADDSSVKLWD
LRKLKNFKTLQLEEGYQVCSLVFDQSGTYLAVGGTDIQVYICKQWAEVLHFTDHSALTTG
LAFGQNAKFLASTGMDRSLRFYSL
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgacttgttatatcagtaatgaggtcacagaccgcccatgtatttcccctgtg
tcgggtcatatttttgatcggcgccttattgaaaagtatttggctgaaaatgggacagat
ccagtaacaaatcagcccttaagtgaggaccagttaattgacatcaaagttgcccatcca
attcgtccaaaaccaccttccgcaaccagtatcccagcaatcctaaaatcattgcaagat
gagtgggatgcagtaatgctccacagttttacattgcgtcaacaactacaaaccactcgc
caggagctctctcatgcactctaccagcatgatgctgcttgtcgtgtcattgctcgtctt
accaaggaggtgacagctgcccgtgaagctcttgctacattgaagccccaggctggaata
tctgtgcctcaagccagccctatgccaccgactggagcagctggctctgcagaagccatg
gaacttggtgaattggttggaatgtcagcagaaattattcaaaagcttcaagacaaagca
actgtgctcactacagaacgtaagaagcgtggtaaaactgtcccagaagatctggttaag
ccagaagaactcagcaaatatcaccaggtttcctctcatgtggggctacacagtgcaagt
gtccctggtattttggcattggatttgtgtccaaccgacacaaacaaaactcttactggt
ggggcagacaagagtgttgttgtatttgatgcactgtcgcaacagatccttgctactctt
aaaggtcataccaaaaaagttaccagtgttgttttccacccttctcaggagctagtattt
tcttcttctccggactccacaatacgggtctggtctgttcctgatgcatcctgtgctcaa
gtgctaagagcacatgaaggggcagtgactggtctaagtttgcatgcaactggagattac
ttgctcagctgttctgatgatcagtactgggcattctctgatgttcatgtgggccgtgta
ctcaccaaagtgacagatgaatcttctgggtgtgctctcacttgtgcccagtttcaccct
gatggtctaatttttggcactggaacagtggactcccaaattaagatctgggatcttaag
gaacgctcaaatgtggctaatttccctggacattctggtcctgtatcatgcatagctttc
tcagagaatggttattatctggctacagctgctgatgactccagtgtgaaactgtgggat
ctgcgaaaactaaagaacttcaaaacgctgcaacttgaagaaggatatcaggtatgctct
ctggtatttgatcagagtggtacatacttggcagttggtgggacagatatacaggtttac
atctgcaagcagtgggctgaagttctgcacttcacagatcacagcgctcttacaactggt
cttgcttttggtcagaatgccaagttcttggcctccacaggaatggatcggagtttgcgt
ttttacagtctttaa
DBGET
integrated database retrieval system
