Xenopus laevis (African clawed frog): 394397
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Entry
394397 CDS
T01010
Symbol
xrcc5.L, xrcc5, xrcc5-a
Name
(RefSeq) X-ray repair complementing defective repair in Chinese hamster cells 5
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
394397 (xrcc5.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xla03400
]
394397 (xrcc5.L)
DNA repair and recombination proteins [BR:
xla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
394397 (xrcc5.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_N
Ku_PK_bind
Ku_C
Motif
Other DBs
NCBI-GeneID:
394397
NCBI-ProteinID:
NP_001081127
Xenbase:
XB-GENE-996228
UniProt:
Q6DDS9
Structure
PDB
PDBj
LinkDB
All DBs
Position
9_10L:59455483..59477913
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AA seq
726 aa
AA seq
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MARAAKSAVVLCMDVGLAMSHSNQGKESPFEQAKKVMMLFLQRQVFAESKDEIAVVLYGT
DTTDNALAREDQYENISVHRHLMLPDFDLLEQIENVVEPGSVQADFLDALIVSMDLLQKE
TLGKKYTRLHIAVFSDLSSPFSVDQLEVIIANLKKAEITLQFFLPFSVDEEEFGGSSNNR
GNAGSSDRGCGPGKGLSDQQKEGIEMVRKIMFSLDGEEGLSEVFTFRDSLERLSIFKKIE
RRPMPWPCQLTVGSSLSIRIVGYKSVTEEKVKKTWTHIDAKTHKKEDIKKETVYCLNNDE
ETEVEKDDTIQGFRYGSDIVPFSKVDQEQMKYKSEGKCFAVLGFTKSSMVLSNQFVGNQV
IRMFAPSDDEAASVALSALIHALDEMDMVAIVRYVYDRRSNPQVGVAFPHIKDKYECLVY
VQLPFMEDIRQYLFSSLKNNKKFTPTESQNSAIDSLIDSMSLIYDDGETKEDLFKTSKLP
NPQFQRLFQCLQHKALNPESPLPPIDQHLLDMLETPVEVKEACMAPLATVKACFPLQEAT
KRKEVKTADEIFTKKTDEPDAKKLKEDDEGFSLLRLADGNVTSVGSVNPDQDFQALLRQK
NTDFKHVSDQLIKRIYECLDVKQTQYYMKSILCIKTFREEAIKLSQVRLFNDFLQLLKQK
VDGSALMEFWDIIVQEEISLITSSESKGSSVTPEEAKQFLAQKEEKVEEAAMMEDEGDVD
DLLDMM
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgagcagccaaaagtgccgtggtgctgtgtatggacgtgggactcgcaatgagc
cattccaaccaaggcaaggagtctccgtttgagcaagccaagaaggttatgatgctcttc
ctgcagagacaggtgtttgcagaaagcaaggatgagattgcagtggttctgtatggcacg
gacaccacagataatgccctggctcgtgaagatcagtatgagaacatctctgtccatcgc
cacctgatgcttccagactttgaccttctagaacaaatagagaatgtagttgagccaggc
tctgtgcaagctgattttcttgatgctctgattgtatcaatggatcttctgcagaaggag
acgctgggaaagaagtacacgcgactgcacattgcagtattctctgatctcagcagcccc
ttcagtgtggaccaacttgaggttattatcgcgaaccttaaaaaagctgaaatcaccctt
cagttctttctgcctttctctgttgatgaagaagagtttggaggttccagtaataacaga
gggaatgcaggcagttcggacagagggtgtggccctgggaaagggctctctgatcaacag
aaagaaggcattgagatggtgaggaagatcatgttctctctggacggggaagaaggacta
agtgaagtttttacatttagggatagtctagagaggctgagcattttcaagaagatcgag
aggaggcctatgccatggccatgccaactgactgtagggtcaagcctttccatacgcatc
gtgggctataaatctgttacagaggagaaagtaaaaaagacctggactcacattgatgcc
aaaacacacaaaaaggaagacataaaaaaggaaacagtttactgtctgaataacgatgaa
gagaccgaagtggaaaaggacgataccattcaaggtttccgttatgggagtgacattgtg
cccttctcaaaggtggatcaggaacagatgaaatacaaatcagaagggaagtgttttgca
gttctgggattcactaaatcatccatggtgctgagtaaccagtttgtgggaaatcaagtg
atcaggatgtttgctccctctgatgacgaggctgccagtgtggccctctcggctctgatt
catgccttggatgagatggatatggttgccattgtacgctatgtttatgataggcgaagc
aatccacaggtgggagtggccttcccacacatcaaggataagtatgagtgccttgtatat
gttcagctgccattcatggaagacatcaggcagtacttattctcctctctcaagaacaat
aaaaagttcaccccaacagaatcccagaactcggccattgactccctgattgacagcatg
agtttgatatatgatgatggagagactaaagaggatttattcaaaaccagcaaattaccc
aatccccagttccaaaggttgtttcagtgtctgcagcacaaggccctaaacccagagagt
cccttgccgcccattgatcagcacctgctggacatgcttgaaaccccagtagaagttaaa
gaggcatgcatggcccccctagccacagtgaaggcttgttttccactgcaagaggccaca
aagaggaaggaggtgaaaactgcagacgagatcttcaccaagaagactgatgaacctgat
gctaaaaaactgaaggaagatgatgaaggtttcagcctcttgcgtctggcagatgggaac
gtcacttcagtggggagcgtgaatccagatcaggatttccaggcattgctgagacaaaag
aacacagactttaaacatgtaagtgaccagctgataaagcgcatttatgagtgtctggac
gtaaagcagactcagtactacatgaagagcatcctctgcataaagacattcagagaggag
gccatcaagttgtcccaggtccggctcttcaatgattttcttcagctgcttaaacagaag
gtggatggcagtgcactcatggaattctgggacattattgttcaagaggaaatttccttg
atcacaagttcagaatccaaaggcagctcagtgactcccgaggaagcaaagcagttcttg
gctcagaaagaggagaaagtggaagaggcagccatgatggaggacgagggagatgtcgac
gacttgcttgacatgatgtaa
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