Xenopus laevis (African clawed frog): 394404
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Entry
394404 CDS
T01010
Symbol
slit2.S, slil3, slit-2, slit2, slit2-a
Name
(RefSeq) slit guidance ligand 2 S homeolog precursor
KO
K06839
slit 2
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xla00536
]
394404 (slit2.S)
Glycosaminoglycan binding proteins [BR:
xla00536
]
Heparan sulfate / Heparin
Axon guidance molecules
394404 (slit2.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
LRRNT
Laminin_G_2
Laminin_G_1
LRR_9
LRRCT
LRR_1
EGF_TEN
hEGF
JAG1-like_EGF2
EGF_DL_JAG
EGF_Teneurin
LRR_EndoS
EGF_3
Motif
Other DBs
NCBI-GeneID:
394404
NCBI-ProteinID:
NP_001081137
Xenbase:
XB-GENE-1004413
UniProt:
Q90WZ3
LinkDB
All DBs
Position
1S:19765831..19983061
Genome browser
AA seq
1530 aa
AA seq
DB search
MLPSFVKKKMCYIGFWKLSISLGLVLVILSEVAPQPCPSQCSCTGTTVDCHGLSLRSVPR
NIPRNAERLDLNANNITRISKTDFAGLRHLRILQLMENKITTIERGAFQDLKELERLRLN
RNNLQVFPELLFLGTPKLYRLDLSENQIQAIPRKAFRGAVDIKNLQLDYNQISCIEDGTF
RALRDLEVLTLNNNNITRLSVASFNHMPKLRTFRLHSNNLYCDCHLAWLSDWLRQRPRVG
LYTQCMGPIHLRGHNVAEVQKREFSCTGQQSFMVHSCSVLHCPAACTCSNNIVDCRGKGL
TEIPTNLPETITEMRLEQNSIKVIPPGAFSPYKKLRRIDLSNNQISEIAADAFQGLRSLN
SLVLYGNKITELPKGLFEGLFSLQLLLLNANKINCLRVDSFQDLHNLNLLSLYDNKLQTI
AKGTFSPLRAIQTLHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQI
KSKKFRCSGTEDYRSKLSGDCFADLACPEKCRCEGTTVDCSNQKLTKIPDHIPQYTAELR
LNNNEFTVLEATGIFKKLPQLRKINLSNNKITDIEEGAFEGANGVNELLLTSNRMENVRH
KMFKGLEGLKTLMLRSNHISCVNNDSFTGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL
NLLANPFNCNCHLAWLGDWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTCDDGNEDN
SCSPLSRCPAECTCLDTVVRCSNKGLKSLPKGIPKEVTELYLDGNVFPLVPKELSNYMHL
TLIDLSNNQISTLSNHSFSNMTHLLTLILSYNRLRCIPLRAFDRLKSLKLLSLHGNDVSA
IPEGAFSDLSALSHLAIGANPLYCDCKMQWLSDWVKSEYKEPGIARCSGPGEMADKLLLT
TPSKKFSCNGPVDVNILAKCNPCLSNPCKNNGTCNNDPVEFYRCTCPYGFKGQDCDVPIH
ACISNPCHNGGTCHLKEGDKEGFWCACTDGFEGENCEVNIDDCEDNDCENNSTCVDGINN
YTCRCPPEYTGELCEEKLDFCSQDINPCQHDSKCIQTLKGYKCDCTPGYIGEHCDIDYDD
CLENKCRNGARCVDAVNGYTCTCPEGYGGLFCESAPPMVLPRTSPCDNFECQNGAQCIVK
GNDLLCQCLPGYRGNKCEKLVSVNFVNKDSFIPIPSTKIRAQANITLQVATDEDSGILLY
KGDKDQVAVELYRGRVRVSYDTGSNPSSAIYSVETINDGNFHVVELVNLDQTLSLIIDGG
TPKSITNLPKQSLLSVDSTLYIGGMPMKNNIAGLRQSSSQNGTNFQGCIRNLYINDELQD
FRKLNLQPGVLPGCEPCHKNVCVHGTCLATSQAGFTCECEGGWTGQLCDIQSNDPCLGNK
CVHGTCLPINSFSYSCKCLQDFVGVLCDEAEDQPNPCQSIKCKHGKCRLSGLGKAYCECS
SGYTGDNCDKEISCRGERIRDYYQRQQGYAACQTTEKVSRLECKGGCSNGQCCGPLRSKR
RKYAFECTDGSSFVDEVEKIIKCGCTKCPS
NT seq
4593 nt
NT seq
+upstream
nt +downstream
nt
atgttaccaagttttgtgaagaagaagatgtgctatattggtttctggaagctgtccatc
tctttgggtttggtactggtcatactcagcgaggtggcacctcagccttgtccatctcag
tgctcttgcacaggcaccaccgtggactgccatgggctctccctacgtagcgtgccacgc
aacatcccaagaaacgccgagcgcctagacctgaatgccaataacatcactagaatctcc
aaaacagactttgctggattaagacacctccggatcttgcagcttatggagaacaagatt
actacaattgagaggggagcattccaagacctgaaagaactggaaagactgcgccttaac
cgaaataatctgcaggtgttccctgaactgcttttcctggggactccaaaactctacaga
cttgacctcagtgagaaccagatccaagccatcccaagaaaggcattccgtggtgcagta
gatattaaaaacctgcagctggattataaccagatcagctgtattgaagatgggacattc
cgagcactgcgtgacctggaagtactcactctcaacaacaataacattactcgactttcg
gtggcaagcttcaatcacatgccgaaactcaggacctttcgactccattccaacaacttg
tactgtgattgtcacctcgcttggttatccgactggctgcgtcagaggccccgagttggt
ctctacactcagtgtatgggacccattcacctgagagggcataatgttgctgaggttcag
aagcgagaattcagctgcacaggtcaacagtcatttatggtccattcttgtagtgtcttg
cattgccctgctgcttgtacctgcagtaacaatattgtagattgccgtggaaaagggttg
actgagatcccaaccaacctcccggagacaataacagaaatgagattggagcaaaattcg
atcaaggtcattcctccaggagcattctcaccatacaagaagttgagaagaattgattta
agcaacaaccagatttctgaaatagccgcagatgctttccaaggcctgcgttcactcaac
tcccttgttctctatggaaataaaattacagagctccccaaaggcttgtttgaaggactg
ttctcattacagttactattactcaatgccaacaagattaattgtttacgagtagactcc
ttccaagatctgcacaacctgaacctcctatctttgtatgacaacaaacttcaaaccatc
gccaaaggcacattctccccactccgtgccatccagacattgcatttggctcagaacccg
tttatctgtgactgccatctgaagtggctggcggattatctccatacaaaccctattgag
accagtggtgcccgctgcaccagcccccgccgactggcaaacaaaaggattgggcagatc
aaaagcaagaaattccgctgctcaggcacagaagactaccgttccaagcttagtggagac
tgttttgcagacttggcctgtccagaaaaatgccggtgtgaaggaaccactgtggactgt
tccaaccaaaaactcacaaagatccctgaccatattccccagtacacagctgagttgcgc
cttaacaacaatgaattcacagttttggaggcaactggaatcttcaagaaacttccccag
ctaagaaaaatcaatctgagcaacaacaagataacagatatagaagaaggggctttcgag
ggggctaatggcgtgaatgagctattgttaacaagtaaccgtatggaaaatgttcgccat
aagatgttcaagggcctggagggactgaaaaccctgatgctcagaagcaatcacattagt
tgtgtgaataatgacagcttcacaggactgagctcagttcgcctgctctccctctatgac
aatcaaattactacagtggctccaggtgcattcgacacactacattctctctctaccttg
aaccttttagcaaatccattcaactgcaactgccacctggcttggttgggtgactggctt
aggaagaagcgcattgtcactggaaaccctcgatgccaaaagccctattttcttaaggag
attccgatccaggacgtggctatacaagatttcacttgtgatgatggaaatgaggacaat
agctgttcgccactatctcgctgccctgcggagtgcacatgtctagatactgttgttcga
tgcagtaacaagggactaaagtctttacctaaaggcatccctaaggaggtcacagaatta
tatttggatggaaatgtgtttccacttgttccaaaggaactatccaactatatgcacttg
acacttatcgacctgagcaacaaccagatcagcactctttctaaccacagcttcagcaac
atgactcacctccttaccttgattcttagttacaatcgtcttaggtgcattccacttcga
gcatttgataggttgaagtctctgaaacttttatccttgcacggcaatgacgtctctgct
atacctgaaggagcattcagtgatctttctgcactgtcacatctagctattggggcgaat
cctctgtattgtgactgtaaaatgcagtggctttccgattgggtgaagtcagaatataaa
gaacctgggattgcaaggtgctctggtcctggagaaatggctgataaactcctcctcacc
accccctccaaaaaattcagctgcaatggacctgtcgatgttaacattcttgctaaatgt
aacccctgcttatcaaatccttgcaagaacaatggcacctgtaacaatgatcctgtagaa
ttctaccgatgcacatgtccttatggctttaaggggcaagactgtgacgtaccaatccat
gcttgcataagtaacccgtgccataatggtggtacctgccatttgaaggaaggagacaaa
gaaggattctggtgtgcttgcaccgatggatttgaaggtgaaaattgcgaggtcaacatt
gacgactgtgaagataatgactgcgaaaataattctacttgtgtcgatggcattaacaat
tacacgtgccgttgcccaccagaatacacaggtgaactttgtgaagagaaactggacttc
tgctcccaagatatcaatccatgtcaacatgactcaaaatgcatccaaacattaaaagga
tacaaatgtgattgtacacctggatatattggggaacactgtgatatcgactacgatgat
tgtctggagaataagtgcagaaatggagcccgttgtgttgatgcagtgaatggttataca
tgtacctgcccagaaggatacggaggcttgttctgtgaatcagcaccaccaatggtgtta
cctcgcacaagtccttgtgacaactttgaatgtcaaaatggagcccaatgcattgtgaaa
gggaatgatcttctgtgccagtgcctgcctggctatcgtggaaacaaatgtgaaaaacta
gtcagcgtaaattttgtgaacaaagactcgtttatcccaattccttcgacaaagatccgc
gctcaggccaacatcactctgcaggttgccactgatgaagacagtgggattttgctctat
aaaggtgacaaggatcaggtagcagtggagttgtatcgtgggagagtgagagttagttat
gacactggaagcaacccttcatctgcaatttacagtgttgagacaataaatgatgggaat
ttccatgttgtggagttggtaaacctggaccaaacactgtcactgatcattgatggagga
accccgaaatccattacgaatttaccaaaacaatcattactaagcgttgattccacactt
tacataggaggtatgcccatgaaaaacaacattgccggtcttcgacagtcttcaagtcaa
aatggtaccaacttccaaggttgcattagaaacctatacattaatgatgaactacaggac
ttcagaaaactaaacttacaacctggagttcttcccggctgtgaaccatgccataaaaat
gtctgcgtccatggcacatgcctggctacaagccaagccggcttcacttgcgaatgtgaa
ggaggatggacagggcaactctgcgatatccagtccaatgatccctgtctgggaaacaag
tgtgtacatggcacatgcctcccaattaattcattctcctacagttgtaaatgccttcaa
gattttgtgggagttctctgtgatgaagctgaagatcaacccaatccctgccagtccatt
aaatgtaaacatggaaagtgcaggctttcaggcttaggaaaagcatactgtgaatgctcc
agtggttatactggagacaactgtgataaagaaatctcttgccgaggggaacggatcaga
gattactaccaaaggcagcaaggttatgctgcttgccagacgaccgagaaggtatcgaga
ctagaatgcaaaggaggatgctcaaatggtcagtgctgtggaccactgaggagcaaaagg
cggaaatatgcttttgaatgcacagatggttcatcctttgtggacgaagttgagaaaatc
ataaagtgtggttgtacaaagtgcccctcctaa
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integrated database retrieval system
