Xenopus laevis (African clawed frog): 397739
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Entry
397739 CDS
T01010
Symbol
col2a1.S, col11a3, col2a1-a, col2a1-b, col2a1b, xcol2a1
Name
(RefSeq) collagen, type II, alpha 1 S homeolog precursor
KO
K19719
collagen type II alpha
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04510
Focal adhesion
xla04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
397739 (col2a1.S)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
397739 (col2a1.S)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xla00536
]
397739 (col2a1.S)
Glycosaminoglycan binding proteins [BR:
xla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
397739 (col2a1.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
397739
NCBI-ProteinID:
NP_001081260
Xenbase:
XB-GENE-6252612
UniProt:
Q91718
LinkDB
All DBs
Position
2S:135276454..135322667
Genome browser
AA seq
1491 aa
AA seq
DB search
MFSFVDSRTLVLFAATQVILLAVVRCQDEEDVLDTGSCVQDGQRYSDKDVWKPEPCQICV
CDTGTVLCDEIICEESKDCPNAEIPFGECCPICPTEQSSTSSGQGVAKGQKGEPGDIKDV
VGPRGPPGPQGPSGEQGPRGERGDKGETGAPGPRGRDGEPGTPGNPGPAGPPGPPGPPGL
GGNFAAQMTGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGESGA
GGPMGPRGPPGPSGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGL
DGGKGEAGAAGAKGESGASGEAGAPGPMGPRGLPGERGRPGSSGAAGARGNDGLPGPAGP
PGPVGPAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGI
PGAKGSSGASGIAGAPGFPGPRGPPGPQGATGPLGPKGETGDPGIAGFKGEHGPKGEIGS
AGPQGAPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGV
PGLGGPKGGNGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGA
RGQPGVMGFPGPKGANGEPGKSGEKGLGGAPGLRGLPGKDGETGAQGPNGPAGPAGERGE
QGPPGPSGFQGLPGPPGSPGEGGKPGDQGVPGEAGAAGLVGPRGERGFPGERGSSGPQGL
QGSRGLPGTPGTDGPKGATGPSGPNGAQGPPGLQGMPGERGAAGISGPKGDRGDTGEKGP
EGAPGKDGSRGLTGPLGPPGPAGPNGEKGESGPSGPPGIVGARGAPGDRGENGPPGPAGF
AGPPGSDGQAGLKGDQGESGQKGDAGAPGPQGPSGAPGPQGPTGVNGPKGARGAQGPAGA
TGFPGAAGRVGTPGPNGNPGPPGPPGSAGKEGPKGVRGDAGPTGRAGDPGLQGPAGAPGE
KGEPGEDGPSGPDGPSGPQGLSGNRGIVGLPGQRGERGFPGLPGPSGEPGKQGGPGSSGD
RGPPGPVGPPGLTGPAGETGREGNPGSDGPPGRDGATGIKGDRGETGPIGAPGAPGSPGA
PGPVGPTGKQGDRGESGSQGPLGPSGPAGARGLNGPQGPRGDKGEAGEAGERGQKGHRGF
TGLQGLPGPPGTAGDQGATGSAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGE
TGPAGPPGQSGPPGPPGPPGPGIDMSAFAGLSQPEKGPDPMRYMRADQASSSVLQTADVE
ANLKTLNNQIESIRSPDGTKKNPARTCRDLKLCHPEWKSGEYWIDPNEGCTVDAIKVFCN
METGESCVYPSPSKIPKKNWWSAKGKEKKHIWFGETINGGFQFSYGDDSSAPNTANIQLT
FLRLLSTDASQNITYHCKNSIAFMDEASGNLKKAVLLQGSNDVEIRAEGNSRFTYNALED
GCKKHTGKWSKTVIEYRTQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgtttagctttgtggattcaaggactctagtgctgttcgcagccacacaagtcatttta
ttagcggttgtacgatgccaagatgaagaagatgtcctggatacaggcagctgcgtgcag
gatgggcagaggtatagtgataaagatgtgtggaaacccgagccctgccaaatctgtgtc
tgtgacactgggactgttctctgcgatgaaataatctgcgaagagtccaaagattgcccc
aatgctgagatccccttcggagagtgctgtcccatctgcccaactgagcaatcttctacc
tccagtgggcaaggagtggccaagggacagaaaggtgaacctggtgatattaaagatgtt
gtaggaccaagaggaccacctggaccacagggaccttctggtgaacaaggacctagagga
gaacgtggagataagggcgagactggtgctcccggaccccgtggaagagatggcgaaccc
ggtactcctgggaacccaggacctgctggcccgcctggacctcctggaccccctggcctt
ggcggaaactttgctgctcaaatgacaggaggatttgatgaaaaagctggcggtgcacaa
atgggagttatgcaaggaccaatgggccctatgggaccaagaggacctcccggcccatca
ggagctcctggacctcaaggtttccaagggaatcccggtgaacctggtgaatctggtgct
ggtggtcctatgggtcctcgtggtcctcctggtccttcgggaaagcctggtgatgatggt
gaagctggcaaacctggcaaatctggtgaacgtggacccccaggacctcagggtgctaga
ggtttcccaggaaccccaggacttccaggagtaaaaggacacaggggttacccaggtctt
gatggtggaaagggtgaagctggtgctgcaggtgccaagggagaaagtggagcttctggt
gaagccggagctcctggtccaatgggtccccgtggtcttccaggtgagagaggacgtcct
ggatcttctggtgctgctggtgctcgtggtaatgatggtctccctggtcccgctggtcca
ccaggacctgttggccctgctggtgctcctggtttccctggtgcccctggctcaaagggt
gaagctggcccaactggagctcgtggccctgagggtgctcaaggacccagaggagaatct
ggtacccctggatcccctggaccttctggagcttctggtaaccctggtactgatggtatt
cctggcgccaaaggttcatctggtgcttctggtattgctggtgcccctggtttccctgga
ccacgtggtccaccaggacctcaaggagctactggtcctcttggtcccaaaggcgagact
ggtgaccctggtatagcaggtttcaagggtgaacatggtcccaaaggtgaaatcgggtct
gcaggtcctcagggtgctcctggcccagctggagaagaaggcaaaagaggagctcgtggt
gaacctggtgctgctgggccacttggtcctcctggtgagagaggtgctcctggtaatcgt
ggtttccctggtcaagatggtcttgctggtcctaagggtgctcctggtgaacgtggtgtt
ccaggtcttggtggaccaaagggtggtaatggtgatcctggccgtcccggtgaacccggt
ctccctggtgctagaggtcttactggccgtcctggtgatgctggtcctcagggaaaagtt
gggccctctggtgctgctggtgaagatggtcgtccaggacctcctgggccacaaggtgct
cgcggtcagcctggtgttatgggattccctggacctaagggtgccaatggtgaacctggc
aaatctggtgagaaaggacttggtggtgctcctggtttgaggggtttgcctggaaaagat
ggtgaaactggtgctcaaggtcccaatggtccagctggacctgctggtgagagaggtgaa
cagggacctcctggtccatctggcttccagggacttcctggacctcccggttctcccgga
gaaggtggcaaaccaggagatcagggtgtgcccggagaagcaggtgcagcaggtcttgtt
ggaccaagaggtgaacgtggtttcccaggtgagcgtgggtcttccggtcctcaaggtctt
cagggttctcgtggtcttcctggaactcctggtactgatggtcccaagggtgcaactggt
ccatctggtcccaatggtgcccaaggtcctcctggtcttcaaggtatgcctggtgagaga
ggagctgctggtatttctggacccaaaggtgatagaggtgatactggtgagaaaggccca
gagggtgctcctggcaaagatggttcaagaggtttgacaggtccacttggtccccctggt
ccagctggtcctaatggtgagaagggtgaatctggtccttctggtccacctggtattgtt
ggtgcccgtggtgcccctggtgatcgtggtgagaatggccctccaggtcctgctggcttt
gctggtcctccaggttctgatggtcaagctggtcttaagggtgatcaaggtgaatctggc
cagaagggtgatgctggtgctcctggtcctcagggtccatctggtgctcctggcccacag
ggcccaactggtgttaatggtcctaaaggagctcgtggtgctcaaggtcctgctggtgct
actggattccctggcgctgctggaagagttggcaccccaggtcccaatggtaaccctgga
cctcctggtcctcccggatctgctggaaaagaaggaccaaagggtgtacgtggtgatgct
ggtcctactggtcgtgctggtgatccaggtcttcagggtcctgctggtgctcctggagag
aagggagagcctggtgaagatggtccttctggtccagatggtcccagtggtcctcaaggt
ttgtctggaaatcgtggtattgttggtctaccaggtcagcgtggtgaaagaggattccct
ggacttcctggcccatctggtgaacctggcaaacaaggaggccctggatcttcaggagac
cgtggaccccctggccctgttggcccacctggtttgactggacctgctggagagactgga
cgagaaggtaatcccggatctgatggcccacctggtcgagatggtgctactggaattaag
ggtgatcgtggtgaaactggaccaattggcgctcctggtgctccaggttcccctggtgct
cctggacctgttggcccaactggaaaacaaggagacagaggagaatctggatcccaaggt
ccacttggtccttctggtcctgctggtgctcgaggtttgaatggtcctcaaggtccacgt
ggtgataagggtgaagctggtgaggcaggagagagaggacagaaaggtcacagaggattc
actggtcttcagggtctacccggtccccctggtactgctggtgatcaaggtgctactggt
tctgccggtccttctggtcctagaggtccccctggccctgttggtccttctggaaaagat
ggctctaatggtatccctggtccaattggtccacctggtccacgcggtcgtagtggtgaa
actggcccagctggtccacctggtcaatctggcccacctggcccccctggtcctcctggg
cctggaattgacatgtctgcttttgctggcctatctcaacctgaaaaaggacctgaccca
atgcgctacatgcgtgctgaccaagcctctagttctgtccttcagaccgctgatgttgaa
gccaatttgaaaaccctgaataaccagatcgaaagcattcgcagcccagatggtaccaaa
aagaacccagcccgcacatgccgtgacctgaaactctgccatcctgaatggaagagtggt
gaatattggattgatcccaacgagggctgcactgtagatgctatcaaagtcttctgcaac
atggagactggagagtcctgtgtataccccagcccatcaaagatccccaagaagaactgg
tggagcgccaagggcaaggaaaagaagcacatttggtttggagagacaatcaatggtggt
ttccaattcagctatggagatgacagctcagcacccaacactgctaacattcagttgacc
ttcctgcgtctgctgtccactgatgcatcccagaacatcacctatcactgcaagaatagc
attgcatttatggatgaagcttcaggcaaccttaagaaggctgttctactccaaggatcc
aatgatgtagaaatcagagctgaaggcaacagcagattcacttacaatgccttggaagat
ggctgcaagaaacacactggcaaatggagcaagacagttattgaatataggacacagaaa
acatctcgcctgcccatcgtagacattgcacctatggatattggtggcgctgatcaggaa
tttggtgttgacattggcccagtctgcttcttgtaa
DBGET
integrated database retrieval system
