Xenopus laevis (African clawed frog): 397836
Help
Entry
397836 CDS
T01010
Symbol
ptch2.S, ptc-2, ptc2, ptch2, ptch2-a, ptch2-b, xptc-2, xptch-2
Name
(RefSeq) patched 2 S homeolog
KO
K11101
patched 2
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
397836 (ptch2.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
MMPL
Motif
Other DBs
NCBI-GeneID:
397836
NCBI-ProteinID:
NP_001081438
Xenbase:
XB-GENE-6252346
UniProt:
Q9DEF3
A0A974HLW6
LinkDB
All DBs
Position
4S:71000935..71030575
Genome browser
AA seq
1413 aa
AA seq
DB search
MASVPPCAGERGFTHLPPGYKSKQPAPSSDLLRRPSYCHAAFALKQIAKGKAVGQKAPLW
LRAQFQALLFSLGCSIQRHCGKVLFIGLLVFGALAVGLRVASIETDIERLWVEAGSRVSH
ELRYTKEKLGEESVYTSQMLIQTPKREGENILTHEALLLHLRAALAASKVQVSMYGKSWD
LNKICYKSGVPIIENGMIERMIEKLFPCVIITPLDCFWEGSQLQGGSAYLPGRADIQWTN
LDPIRLMEELGQFTSLDGFKEMLDKAEVGQAYMERPCLDPTDSDCPESSPNKKTKKNPDI
VSTLRGGCYGFSKKFMYWQKELILGGMLKGPNGELKSAEALQTMYLLMSPGQLFEHFKDD
YEIHDINWNEEKAAAILESWQRKFVEQAQQSVPQNSSQDIHAFSTTTLNDIMKSFSDVSA
IRVAGGYLLMLAYACVTLLRWDCSKSQGAVGLAGVLLVALSVASGLGLCSLLGISFNAAT
TQVLPFLALGIGVDDMFLLAHAFTETSRSTPFKDRTGECLRRTGTSVTLTSINNMIAFFM
AALVPIPALRAFSLQAAVIVVFNFAMVLLIFPAILSLDLQRREDQRLDILCCFYSPCSSR
VIQIQPQEFSDANDNHTYHPSSYGNPTITTSTQITTTVQAFTQCDPSGHHIVTILPPTSQ
ISTSPSVIVPTMDPLGSQIFTPSSSTRDLLAQLDESKEKRECVPLPFLKWSLSDFAREKY
APVLLKAETKGIVVTLFMALLGLGLYGTTMVHDGLYLTDIVPRETKEYNFISAQFKYFSF
YNMFIVTKDGFDYPKAQESLYDLHEAFGSVKYVVREEGRDLPKMWLHYFQDWLRGLQTSF
DMDWESGYITQDSYRNGTEDGVLAYKLLIQTGNKKEPFNFNQLTSRRLVDEKGLIPQDAF
YIYLTVWVSNDPLGYAASQANFYPQPPEWIHDRYDTTGENLRIPATEPIEFAQFPFYLNG
LRQTSDFVEAIESVRSVCEEFVKQGVHSYPSGYPFLFWEQYIGLRHWFLLAISIVLACTF
LVCAILLLNPWTAGIIVFILAMMTVELFGIMGLIGIKLSAIPVVILIASVGIGVEFTVHV
ALGFLTAIGDRNQRSVLALEHMFAPVLDGAISTLLGVLMLAGSEFDFILRYFFAVLTILT
ILGLLNGLVLLPVLLSLIGPPAEVTPADNSSRLPTPTPEPLPPPLSHHAFYMNHKGFSDP
EDSSEYYSETTTTSGIEEDDPQLYERSAYIIPPKPPHIILEASKDPSYPKIMLVKPCKGN
QDINNREALPGKDMSRRTCQEQKDIKEPSGSRMRQQLPTSSGPTRTNQPQNSRAQHNTRP
QGHRTAPPAYCAKMPGHNGSITTVTATASVTVAVHPSLPGTAHGYSHEGFEDSDIDCMAI
RPEWAKRRVKHPEVFELEDLEQDRRQDDASVRH
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atggcctctgttcccccctgtgcgggggagaggggctttacacatctccccccgggttac
aaaagcaaacagccggctcccagctcggatctgctgaggagacctagctattgccatgcc
gcctttgcactcaagcagatcgctaagggtaaagctgttggccaaaaggctcctctctgg
ctacgagctcagttccaagctttgcttttctccctgggctgttccatccaaagacactgc
gggaaggtcttgttcattggattgctggtgtttggggctcttgctgtgggccttcgtgtg
gcctccattgagactgatatcgaaaggttatgggtggaagctggaagcagagtgagccat
gagcttcgctacactaaggagaaattgggagaagaatctgtatatacttcacaaatgctg
atccagacacctaaaagggaaggagaaaatatactgacccatgaagccttgcttcttcat
ctgagagcagctcttgcggccagtaaggtgcaagtgtctatgtatggaaaatcttgggac
ctgaataaaatctgttataaatctggagttccaattattgaaaatggcatgattgagagg
atgattgagaaacttttcccgtgtgtaataattacacctctggactgtttttgggaagga
tcccagcttcaaggtggctctgcatatctaccaggaagagctgacattcaatggaccaac
ctagaccccatccggttaatggaggagcttggtcagttcaccagccttgatggcttcaag
gaaatgctggacaaagctgaagtaggacaggcatatatggaacgaccttgcctggacccc
acagacagtgattgccctgaaagttctcctaacaagaagacaaagaagaaccctgatatt
gtttctacacttcgtggtggctgttatggattttccaagaaatttatgtattggcagaaa
gaactgattttggggggaatgttgaaagggccaaatggtgaactcaaaagtgctgaagct
ctgcagacaatgtacctcttaatgagcccaggacagctttttgaacacttcaaagatgat
tatgagattcatgacattaactggaatgaggagaaagcagcagccatcttggaatcctgg
caaagaaagtttgtagagcaagcacaacagtccgtcccacagaactcatcccaggacatc
catgctttttctaccaccacacttaatgacatcatgaagtccttctctgacgtcagtgcc
atccgcgtggctgggggatacctccttatgctggcttatgcctgtgtcactttgctgcgt
tgggactgttccaaatcccaaggagcggtcggcttagctggtgtacttcttgtggctctc
tctgtagcctcaggtcttggactctgctctctcctgggcatctccttcaatgctgctact
acacaggtccttccatttttggccttgggcattggagtagatgatatgttcctcctggca
catgcattcactgagaccagccggagtacccccttcaaggatcggacaggtgaatgcttg
agacgtacaggtactagcgtgaccctaacatcgatcaacaacatgattgcattcttcatg
gcagcacttgtgcctatccctgccttacgggcattctctctgcaggcagcagtgatagtt
gtcttcaactttgcaatggtcctattaatatttcctgccatactgagcctggaccttcaa
aggagggaggaccaaaggttggacatcctctgttgcttttacagcccttgctcttccaga
gtgattcagatccaaccccaggagttttctgatgcaaatgacaatcatacttaccatccc
tcctcatatggaaacccaaccatcaccactagcacacagatcactaccacagtgcaagct
tttacacagtgtgacccatctggacatcatattgtcaccatcttaccccctacttcacag
atttctacgtcaccctcagtcattgtgcctactatggaccctcttgggtcccaaattttc
accccatctagctcaactcgggatttgttggcccaactagatgaaagcaaagaaaagagg
gagtgtgttcccctgccattcctaaaatggagcctctctgattttgcccgggaaaaatat
gcccctgtgttgctcaaagcagaaaccaagggaattgttgtgactctattcatggctctt
ctgggtcttgggctgtatgggaccaccatggtccatgatggattgtacctaacagacatt
gtgccacgtgaaaccaaggaatacaacttcatctctgcccagttcaagtatttctccttc
tataacatgtttattgtaaccaaggatggatttgattaccccaaagcccaggaatctctt
tatgatcttcatgaagcatttggctctgtcaaatatgtagtgcgtgaagaaggaagagac
ctgcccaaaatgtggctccattactttcaggactggcttagaggccttcagacttccttt
gacatggattgggaatcaggatatataacacaggacagttacagaaatggaactgaagat
ggtgttctggcctataagctcctcattcaaactggaaataagaaggaacccttcaacttc
aatcagttgacaagccgacgattggtggatgagaaggggctgataccacaggatgcgttc
tatatctacttgactgtttgggtcagcaatgatccactgggctatgcagcttcacaggcc
aacttctacccacagcctccagagtggatacatgaccgatatgacaccactggggagaat
ctcagaatcccagctaccgagcccattgaatttgctcagttcccattttacttgaatggc
cttcggcaaacatcagactttgttgaggccattgagagcgtgcgttctgtttgtgaggag
tttgtcaaacagggtgttcacagctaccctagcggttatcccttcctcttctgggagcaa
tacatcgggctccgccactggttcctcctggctatcagcattgtcttggcttgcaccttt
ctggtgtgtgcaattcttcttctgaatccctggactgcaggcatcattgttttcatattg
gccatgatgacagtcgagctttttgggatcatgggattgatcggtattaaactgagtgcc
attccagtggttattctcattgcttcagttgggattggagttgaattcactgtgcatgtg
gccctgggcttcctcactgctattggagaccgaaaccagcgttcagtactggctctggaa
catatgtttgctccagtcctggatggggccatttccactcttttaggagtgcttatgctt
gcaggatctgaattcgatttcattctgaggtacttctttgctgtcctgacaattctgaca
attttgggcctactcaatggacttgttctccttccagtgctgctttcattaattggaccc
cctgctgaagttaccccagctgataacagtagccgattgcctactcccacacctgaacct
cttccaccacctcttagccaccatgccttctatatgaaccataaaggatttagtgatcct
gaagattcttcagagtactactctgagaccacaaccacatcaggaatagaggaagatgac
ccccagctatatgaacgcagcgcttacattataccccccaaaccaccacacatcatcctg
gaagccagcaaggatcccagttatcccaaaataatgttggtgaagccttgcaagggaaac
caggatatcaataacagagaggcacttcctggtaaagacatgtcacgtagaacctgccaa
gagcagaaggacattaaggagcccagtggatcaaggatgagacaacagttgcccacatca
tctgggccgacaaggactaaccagccccagaattctcgggctcagcacaatacaaggcct
caaggccacaggactgcacctccagcatactgtgcgaaaatgccaggacacaatggttcc
attactacagtaacagctacagcttctgtaactgttgctgtacacccaagcctgcctgga
actgcacatggctacagtcacgagggctttgaggacagtgatatagactgcatggcaatc
aggccagagtgggcaaaacgtagagtcaaacacccagaagtcttcgaattggaagatctg
gaacaagatagaagacaggatgacgcgtctgttcgacattag
DBGET
integrated database retrieval system
