Xenopus laevis (African clawed frog): 397935
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Entry
397935 CDS
T01010
Symbol
ddx3x.S, an3
Name
(RefSeq) putative ATP-dependent RNA helicase an3
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
397935 (ddx3x.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
397935 (ddx3x.S)
03041 Spliceosome [BR:
xla03041
]
397935 (ddx3x.S)
03036 Chromosome and associated proteins [BR:
xla03036
]
397935 (ddx3x.S)
Enzymes [BR:
xla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
397935 (ddx3x.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
397935 (ddx3x.S)
mRNA cycle factors
Common to processing body (P body) and stress granule
397935 (ddx3x.S)
Spliceosome [BR:
xla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
397935 (ddx3x.S)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
397935 (ddx3x.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
397935
NCBI-ProteinID:
NP_001095245
Xenbase:
XB-GENE-17330554
UniProt:
P24346
LinkDB
All DBs
Position
2S:complement(48892977..48909224)
Genome browser
AA seq
697 aa
AA seq
DB search
MSHVAVENVLNLDQQFAGLDLNSADAESGVAGTKGRYIPPHLRNKEASRNDSNWDSGRGG
NGYINGMQDDRDGRMNGYDRGGYGSRGTGRSDRGFYDRENSGWNSGRDKDAYSSFGSRGD
RGKGSLFNERGSGSRRTDDRRQDGFDGMGNRSDKSGFGRFDRGNSRWSDDRNDEDDWSKP
LAPNDRVEQELFSGSNTGINFEKYDDIPVEATGSNCPPHIESFHDVTMGEIIMGNIQLTR
YTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDAMKHLQENGR
YGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHL
LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRQTM
MFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDLLNATG
KDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA
VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNINITKDLLDL
LVEAKQEVPSWLENMAYEQHHKSSSRGRSKSRFSGGFGAKDYRQSSGAGSSFGSSRGGRS
SGHGGSRGFGGGYGGFYNSDGYGGNYGGSSQVDWWGN
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtggaaaatgtcctcaatctagaccagcagtttgctggcctagat
ttgaattcagccgatgctgaaagtggtgttgctggaacaaaaggacgttatattcctcca
catttgagaaacaaagaagcctcaaggaatgactccaactgggactctggccgtggcggg
aatggctacatcaatgggatgcaagatgaccgtgacggtcgtatgaatggttatgatcga
ggtggctatggaagccgtggtactggaagatctgacagaggcttttatgacagagaaaat
tctgggtggaattcaggcagagacaaagatgcatacagcagttttggctctaggggtgac
cggggcaaaggaagcttatttaatgagagaggaagtggatccagaagaactgatgaccgt
cgtcaagatggctttgatggaatgggtaacagaagtgataagagtggctttggtagattt
gacagaggtaacagccgttggtcagatgatagaaatgatgaggatgactggtcaaaacct
ctcgctccaaatgaccgtgtagaacaggaacttttctctgggagcaatactggcattaat
ttcgagaagtatgatgacattccagttgaagcaacaggcagcaattgcccaccacacata
gaaagttttcatgatgttactatgggtgaaattatcatgggaaacattcagctaacccgt
tacacgcgaccaaccccagtgcagaaacatgcaattccaataatcatagagaaacgggac
ttgatggcttgtgctcagacaggatctgggaaaactgcagcatttcttctgcccatattg
agtcagatctatgcagatgggcctggtgatgcaatgaagcacttacaggaaaatggaaga
tatggtagacgcaaacagtttccactttctcttgttttggcacctaccagagagctagca
gtacaaatctatgaagaggctcgaaagtttgcatataggtccagagttcgcccatgtgta
gtctatggtggggctgatattgggcagcagatacgagacttggaacgtggttgtcatcta
cttgttgccactcctggacgtcttgttgacatgatggagaggggaaagattggcttagac
ttttgcaagtatttggtactagatgaagcagacagaatgcttgacatgggttttgaacct
cagattcgtcggattgttgaacaagacactatgccacccaaaggtgtaagacagactatg
atgttcagtgccactttccccaaagagattcagatacttgccagagacttcttggatgaa
tatattttcttggcagttggtagagttggttctacttcagaaaatataactcaaaaggtt
gtttgggttgaggagatggataaacgttcatttttgcttgacctccttaatgcaactggg
aaagattccttaactcttgtctttgtggagaccaaaaagggtgcagatgcacttgaagac
ttcttgtatcatgaaggttatgcctgtacaagcatccatggagataggtctcagagagac
agagaagaagcacttcaccaattccgatcaggaaaaagcccaatccttgttgccactgct
gtagcagctagaggtcttgacatttcaaatgtaaagcatgtcataaactttgatctacca
agtgacattgaagaatatgtacatcgtattggtcgtactggacgtgtagggaatcttggt
cttgcaacatcttttttcaacgagaagaacataaacataacaaaagatttgctggatctg
cttgtggaagcaaaacaggaggttccttcttggttggagaacatggcatatgaacagcat
cataagagcagcagtcgtgggcgttcaaagagtcgtttcagtggtggattcggtgccaaa
gactatcgtcagagtagcggtgcgggtagcagctttggcagcagccgcggtggtcgaagc
agtggtcatggaggcagcaggggatttggaggtggctatggtggcttctataacagtgac
ggatatggaggcaactacgggggcagctcccaggttgactggtggggcaactaa
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