Xenopus laevis (African clawed frog): 397937
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Entry
397937 CDS
T01010
Symbol
rpa1.L, hssb, mst075, repa1, rf-a, rp-a, rpa, rpa1, rpa70
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03030
DNA replication
xla03420
Nucleotide excision repair
xla03430
Mismatch repair
xla03440
Homologous recombination
xla03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
397937 (rpa1.L)
03420 Nucleotide excision repair
397937 (rpa1.L)
03430 Mismatch repair
397937 (rpa1.L)
03440 Homologous recombination
397937 (rpa1.L)
03460 Fanconi anemia pathway
397937 (rpa1.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xla03000
]
397937 (rpa1.L)
03032 DNA replication proteins [BR:
xla03032
]
397937 (rpa1.L)
03400 DNA repair and recombination proteins [BR:
xla03400
]
397937 (rpa1.L)
Transcription factors [BR:
xla03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
397937 (rpa1.L)
DNA replication proteins [BR:
xla03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
397937 (rpa1.L)
DNA repair and recombination proteins [BR:
xla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
397937 (rpa1.L)
MMR (mismatch excision repair)
397937 (rpa1.L)
DSBR (double strand breaks repair)
HR (homologous recombination)
397937 (rpa1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
Pox_vIL-18BP
Motif
Other DBs
NCBI-GeneID:
397937
NCBI-ProteinID:
NP_001081585
Xenbase:
XB-GENE-945055
UniProt:
Q01588
LinkDB
All DBs
Position
2L:complement(36042718..36079480)
Genome browser
AA seq
609 aa
AA seq
DB search
MALPQLSEGAISAMLGGDSSCKPTLQVINIRPINTGNGPPRYRLLMSDGLNTLSSFMLAT
QLNSLVDNNLLATNCICQVSRFIVNNLKDGRRVIIVMELDVLKSADLVMGKIGNPQPYND
GQPQPAAPAPASAPAPAPSKLQNNSAPPPSMNRGTSKLFGGGSLLNTPGGSQSKVVPIAS
LNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEMVDESGEIRATAFNEQADKFFSII
EVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSVIPCDDSADVPMVQFEFVSIGELE
SKNKDTVLDIIGVCKNVEEVTKVTIKSNNREVSKRSIHLMDSSGKVVSTTLWGEDADKFD
GSRQPVVAIKGARLSDFGGRSLSVLSSSTVMINPDIPEAFKLRAWFDSEGQVVEGTSISE
SRGGGTGGGNTNWKSLLEVKNENLGHGEKADYFTSVATIVYLRKENCLYQACPSQDCNKK
VIDQQNGLFRCEKCNKEFPNFKYRLILSANIADFGENQWITCFQESAESILGQNATYLGE
LKEKNEQAYDEVFQNANFRSYTFRARVKLETYNDESRIKATAVDVKPVDHKEYSRRLIMN
IRKMATQGV
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggcacttccacaactgagcgagggcgctatctcggctatgttgggtggcgattcttct
tgcaagccaactctgcaagtgattaatatccgcccaatcaacactggaaatggccctcca
cgttaccgtctcttaatgagcgatggcctgaataccctttcatcttttatgttggcaacc
cagctgaactcccttgtggataacaatcttcttgccacaaactgtatttgtcaggtgtca
cggtttattgtaaataatctgaaagatggaaggagagtcatcattgtaatggagttggac
gttctgaaatctgctgatttggttatgggaaagattggcaatccacagccttacaatgat
gggcaaccgcagcctgcagcacctgcaccagcatctgctcctgctccagcacctagcaaa
ctacagaacaattcagctcctcctccttcaatgaacagaggaacgtctaaattgtttgga
gggggaagtttattgaacacacctgggggatctcagtccaaggtagtgcccattgcaagt
ctcaatccttaccagtccaagtggacggttcgtgctagagttaccaataaaggtcagatc
cgcacgtggagcaactcccgaggggaagggaagctattttcaattgagatggtggatgag
agtggtgagatccgagctacagctttcaatgagcaagctgacaagttcttttccattatt
gaagtcaacaaggtgtattacttctccaaaggcacactaaaaattgccaacaagcagtac
acctctgtgaagaacgactatgagatgactttcaacagcgagacgtctgttattccctgt
gacgactctgctgatgtcccaatggtgcagtttgaatttgtatctattggcgaattagaa
agcaagaataaagataccgttttagatatcataggcgtttgtaagaatgttgaagaggta
accaaggtcacaataaaatccaacaacagagaagtttctaagaggagcatccatctaatg
gattcatctggcaaagtggtctcaacaactctgtggggtgaagatgccgataaatttgat
ggctcccgacagcctgttgttgcaatcaaaggagcaaggctttcagatttcggagggcga
tcactttcagtcttgtcgtctagcaccgtaatgatcaatcctgatattcctgaagcattc
aaactccgtgcatggtttgactcggaggggcaagtggtagaaggaacatcaatctctgaa
tctcgcggtggtggaacgggaggtggaaacactaattggaagtctttgttagaagtgaaa
aatgaaaaccttggccatggtgaaaaggcagattatttcaccagcgttgctacaatcgtg
tatcttcggaaggaaaactgtctctatcaggcctgcccctcacaagactgtaacaaaaag
gtgatagatcaacagaatggccttttccgctgtgaaaaatgcaacaaagaatttccaaac
ttcaaatatcgtctcatcctttcagctaacattgctgactttggggagaatcagtggatt
acctgcttccaagaatctgctgagagtattctgggccagaatgctacttatcttggagaa
cttaaggaaaaaaacgaacaagcctatgatgaggtgtttcagaatgccaacttccgttct
tacacgttcagggctcgagtcaagctggagacatacaatgatgaatctcgtataaaggcc
acggccgtggatgtgaaacctgttgaccacaaagaatactctaggaggctaattatgaac
attaggaaaatggcaactcaaggtgtctga
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integrated database retrieval system
