Xenopus laevis (African clawed frog): 397973
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Entry
397973 CDS
T01010
Symbol
polb.S, polb
Name
(RefSeq) DNA polymerase beta
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
397973 (polb.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xla03400
]
397973 (polb.S)
Enzymes [BR:
xla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
397973 (polb.S)
DNA repair and recombination proteins [BR:
xla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
397973 (polb.S)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
397973 (polb.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_lambd_f
HHH_8
DNA_pol_B_thumb
HHH_5
HHH_2
Cdd1
NTP_transf_2
Motif
Other DBs
NCBI-GeneID:
397973
NCBI-ProteinID:
NP_001081643
Xenbase:
XB-GENE-999702
UniProt:
O57383
A0A974D936
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All DBs
Position
3S:22242488..22261477
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AA seq
334 aa
AA seq
DB search
MSKRKAPQESPNEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPTKIKSGTEAK
KLDGVGAKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPAAARKFFDEGIK
TLDDLRNNEHKLNHHQKIGLKHFDDFEKRIPRKEMLQMQEIILDKVNNLDPEYIATVCGS
FRRGAESSGDMDILLTHPDFTSESAKQPRLLHQVVQCLEDCNFITDTLVKGDTKFMGVCQ
LPCESDQDYPYRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTLRPL
GVTGIAGEPLPIDSEKDIFDYIQWKYREPKDRSE
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaaggaaagcaccacaggagagccccaatgaaggaatcacagacttcctcgta
gagttggctaattacgagaggaatgtcaacagagctattcacaaatacaatgcttacagg
aaagctgcatcagttattgctaaatatcccactaagatcaagagcgggacagaggccaaa
aaactggatggggttggagccaaaattgctgagaaaatagatgagtttctggccactgga
aaactgcgcaagctagaaaagatccggcaagatgacaccagttcctccattaattttcta
acaagggtcactggaataggacctgcagctgctaggaagttttttgacgaaggaattaag
acattggacgatctcagaaataatgaacataaattgaatcaccatcaaaagattggattg
aaacactttgatgattttgagaagcggatcccacgtaaggagatgttgcaaatgcaggaa
ataattctagataaagtgaataacctggaccccgagtacatcgctacagtatgtggaagc
ttcagacgaggtgcagagtccagtggggatatggatattctactaactcacccagacttc
acttcagagtctgccaaacagccgcgcctcttgcatcaggttgtgcagtgcctggaagat
tgcaacttcatcacagacacacttgtaaagggagacacaaaatttatgggggtgtgccag
ctgccttgtgagagtgaccaggactatccgtaccggaggatagatatcaggctgatacca
aaggaccagtattactgtggagtcctctatttcaccggcagtgatattttcaacaagaac
atgcgaacccatgccctggagaaaggcttcactctgaatgagtacaccctgcgcccgctg
ggagtcacaggaatagccggtgagcctttgccgatagacagtgagaaggatatatttgac
tatatacagtggaaataccgggagccaaaggatcgcagcgaatga
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