Xenopus laevis (African clawed frog): 398001
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Entry
398001 CDS
T01010
Symbol
rom1.S, rds35, rds36, rom, rosp1, tspan23, xrds35, xrds36
Name
(RefSeq) RDS/peripherin-like protein xRDS36
KO
K17344
rod outer segment membrane protein 1
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
xla03037
]
398001 (rom1.S)
Cilium and associated proteins [BR:
xla03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
398001 (rom1.S)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Tetraspanin
DUF3149
OCIA
SufE
Motif
Other DBs
NCBI-GeneID:
398001
NCBI-ProteinID:
NP_001081693
Xenbase:
XB-GENE-17334124
UniProt:
O42582
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All DBs
Position
4S:complement(1530787..1537517)
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AA seq
345 aa
AA seq
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MVLFKAKFSFQRRVKLAQTLWLLSWLSVLVGCLTFGMGIFLKVQLWIHNEVMDNTTAHAV
PNTVITAGLVGILLGYFAGKISQASMDLTKYQRWKSFMMPFFFLAILSCIVCLAALVLSV
ALRGTLEESLKIGLRNAIRFYKDTDTPGRCYQKRSMDKLEMDFQCCGNNHPKDWFEVQWI
SNRYLDFSSKEVKDRIKSSVDGRYLMDSVPFTCCNPSSPRPCIQIEITNNSAHYSYNFQG
DDVNIWVRGCREALLGYYTGIMATNGAAVTLSFLLQASVLVSLRYVQTSMDKIRDPDDVE
ADTEGFLLEKGVMETVNSSLEKIKDLFKSNQVETAEGGGEGAAGS
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atggtcctctttaaggccaaattttctttccagaggcgagtgaaacttgcacaaactcta
tggcttctctcctggctcagtgtcctagtggggtgcctgacatttggaatgggaatcttt
ctaaaggtgcagctctggatacacaatgaagtgatggacaacaccacagctcacgccgtt
cccaacacggtgataacagccgggctagtgggaatactccttggctattttgcaggaaag
atcagccaggcctctatggatctgacaaagtaccaacgctggaagtctttcatgatgccc
tttttctttttggcaattctcagctgcatcgtttgtctggctgcccttgtcctcagtgtg
gcattgaggggcaccttagaagaatcccttaaaatagggctaaggaacgcaattcggttt
tacaaggacacagacacgcctggacgctgctatcagaagaggagcatggacaaactcgag
atggacttccagtgctgcggaaacaaccaccctaaagactggtttgaggtgcagtggata
agcaatcgttatctggacttcagctctaaagaagtcaaagatcgtataaaaagtagtgtg
gatggacggtacctgatggacagtgtcccattcacctgctgtaatcccagctcaccccgg
ccttgcatccaaatcgagatcaccaataactcagcccattacagctacaacttccagggt
gatgacgtgaacatctgggtgaggggctgcagagaggcgcttttaggctactacactgga
attatggcaaccaatggagcagccgttaccctgtcttttcttctgcaggcctcggtgctg
gtgagccttcgctatgtacagacctctatggacaagatcagagatcctgatgatgtggag
gcagacacagaaggttttcttttggagaaaggagtgatggaaactgtaaactcttccctg
gagaaaataaaagatcttttcaagtcaaatcaggtggagacagcagagggaggaggagaa
ggagcagcgggtagctag
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