Xenopus laevis (African clawed frog): 398050
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Entry
398050 CDS
T01010
Symbol
fxr1.L, fxr1-a, fxr1-b, fxr1h, Fxr1p, xfxr1, xFxr1p
Name
(RefSeq) fragile X mental retardation syndrome-related protein 1 homolog A
KO
K15516
fragile X mental retardation protein
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
398050 (fxr1.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
398050 (fxr1.L)
Factors involved in mRNA localization
Other mRNA localization factors
398050 (fxr1.L)
mRNA cycle factors
Stress granule specific factors
398050 (fxr1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXMRP1_C_core
FXR_C1
KH_9
Tudor_FRX1
FXR_C3
KH_1
Agenet
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
398050
NCBI-ProteinID:
NP_001081786
Xenbase:
XB-GENE-6252042
UniProt:
P51115
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All DBs
Position
5L:complement(115239509..115269984)
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AA seq
676 aa
AA seq
DB search
MEDMTVEVRGSNGAFYKGFVKDVHEDSLTVVFENNWQPERQVPFDEVRMPPLPDIKKEIT
EGDEVEVYSRANDQEPCGWWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQNKT
VTKNSFFKCTVDVPEDLRESCSNENVHKEFKKAVGACRVYFHAETNQLIILSACESTVKR
VNILSDMHLRSIRTKLMLMSRNEEATKHLECTKQLASAFHEEFIVREDLMGLAIGTHGSN
IQQARKVPGITAIELDEDSGTFRIYGESAEAVKKARSYLEFVEDFIQVPRNLVGKVIGKN
GKVIQEIVDKSGVVRVRIEGDNETKLPREDGMVPFVFVGTKENIGNVQVLLEYHIAYLKE
VEQLRMERLQIDEQLRQIGMGFRPSSSRGTEKEKGYATDESTASSVRGSRSYSGRGRGRR
GPNYTSGYGTNSELSNPSETESERKEELSDWSLAGEDERESRQQRDSRRRPGGRGRSGSA
GRGRGGSRGGKSSISSVLKDPDSNPYSLLDNTESDQTADTDASESHHNTNRRRRSRRRRT
DEDSSLMDGMTESDNASVNENGLDDSEQKPQRRNRSRRRRFRGQAEDRQPVTVADYISRA
ESQSRQRNLPKETLAKGKKEKVKDVIEEHGPSEKVINGPRASSADKASNPQTASTERNQA
SCQDGSKQEAIMNGVS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggaggacatgacggtggaagtgcgcggctctaacggagcattttacaagggatttgtc
aaggatgtgcatgaagattccctcacagttgtttttgaaaacaactggcaaccagagcgt
caggtgcctttcgatgaagtccggatgcctcctctccctgatattaaaaaggaaattact
gaaggagatgaggttgaggtgtattcccgagctaatgaccaagaaccttgtgggtggtgg
ttagcaaaagtacgaatgatgaaaggagagttttatgttattgaatatgctgcttgtgat
gctacctacaatgaaattgtaacatttgaacgtctgcgacctgtaaaccagaataaaacc
gtaactaagaactccttcttcaaatgtacagtggatgtccctgaagatttaagagaatcg
tgttctaatgaaaatgtgcataaggaattcaagaaagctgtaggagcctgccgagtttat
tttcatgcagaaactaatcagctgataatactgtctgcatgcgaatcaactgtaaagaga
gtaaacatactgagcgacatgcatttgcgaagtatccgcaccaaactgatgcttatgtcc
agaaatgaagaggctacaaaacatttagaatgtacaaaacagcttgcatcagcatttcat
gaagaatttattgttcgggaagatttaatgggcctggcaatagggacacatggaagtaat
atccaacaggcaagaaaggttccaggtattactgctattgagttagatgaagatagcggc
acatttcgaatttatggggagagtgcagaagctgttaaaaaagccagaagttacttagag
tttgtggaagatttcattcaagtacctagaaatcttgtgggaaaagtaattggcaaaaat
ggaaaagtcattcaagaaattgttgataaatctggagtagttagagtcagaattgaggga
gacaacgaaacaaagttacctcgtgaagatggtatggttccctttgtttttgttggaacc
aaagagaacattggtaatgtacaggttcttctggaataccacattgcatatttgaaggag
gtagagcaacttcgaatggaaagactacagatagatgagcaacttcgtcagattggtatg
ggcttcagaccttcttctagcagaggaacagagaaagagaaaggatatgcaactgatgaa
agcactgcttcatctgtacgaggaagcaggtcttacagtggcagaggcagaggtcgcagg
ggcccaaattatacatctggttatggtacaaattctgagctttccaatccttctgagact
gaatcagaaagaaaagaggaactgagtgactggtcacttgctggcgaagatgagcgtgaa
agccgccaacagcgtgacagtcgaaggcgccctgggggtagaggaaggagtggatctgct
ggtcgaggtcggggaggatcaaggggtggaaagtcttctatcagttctgtgcttaaggat
ccagacagcaacccatacagcttacttgacaacacagaatctgaccagaccgctgacaca
gatgcaagtgagtctcaccacaacacaaaccgtcgaaggagatctcggaggaggaggact
gatgaggattcctcactaatggacggaatgactgagtctgacaatgcatctgttaatgaa
aatggcttggatgatagtgagcaaaaaccccagcgacgcaatcgtagccgcaggcgtcgc
ttcaggggtcaggcagaagatagacagccagttacagttgctgactatatctctagagca
gaatctcaaagccggcagcgaaatctacctaaagaaactttggcaaaaggcaaaaaagaa
aaggtgaaggatgtaattgaagagcacggaccttcggaaaaagtcattaatggcccaaga
gcttcttctgccgacaaggcttcaaatccacagaccgcatccacagaaagaaaccaagca
agctgtcaagatggaagtaaacaagaagccataatgaatggggtgtcttaa
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integrated database retrieval system
