Xenopus laevis (African clawed frog): 398142
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Entry
398142 CDS
T01010
Symbol
phf1.L, pcl1, phf1, xpcl1
Name
(RefSeq) PHD finger protein 1 L homeolog
KO
K11467
PHD finger protein 1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
398142 (phf1.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xla03000
]
398142 (phf1.L)
03036 Chromosome and associated proteins [BR:
xla03036
]
398142 (phf1.L)
Transcription factors [BR:
xla03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
398142 (phf1.L)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
398142 (phf1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_2
Mtf2_C
ASH2L-like_WH
PHD
DUF4537
SGF29_Tudor
Motif
Other DBs
NCBI-GeneID:
398142
NCBI-ProteinID:
NP_001081958
Xenbase:
XB-GENE-866106
UniProt:
Q9PTQ3
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Position
8L:complement(63726258..63751529)
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AA seq
544 aa
AA seq
DB search
MEGREPSTRPSRTTPASPRVTPALVKRPRFQTLARFWEGQDVLARWTDGLLYLGIVKKVD
SAQETCLVRFEDNSQFSVLWKDIFPPAVPGKEQLCCVCNSQTCTPDNKLVHCGKCKHAYH
QECHVPSVPCDTDCPGNSWMCRQCVFAVATKRGGALKKGPYAHAMLHMKLSLPYQLKSLE
WDQLHLTNKQQCYCYCGGPGEWNMKMLQCCRCLQWFHEACTQCLSKPLLYGDRFYVFECS
VCTRGPENAWRLPLAWVDVSHLVLYHLSICCKKKYFDFEREILSFVNENWDSLLLGELTD
TPRSERYSHLLHALTAQKDRFISGKEIKKKKCLFGLQTRVPPPAPQSTESQLRLQESKDR
TSTPCVSSLVGRMGLMRRSTHRKRTQSIEKQTGRERQKLCKAVTQDVVQNPFSANQEYQG
YRGSAYNFRRTGARCLQNPPIRMFASFHPSANTSGSVAASLQSSGISSEVQDPPLLGEMM
ETSGPAPASHESPQVTPSLPSSSVSSEGCAWLGSTEQGMRVLARRVTAQGAVEYLVEWGA
GEVF
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggagggacgagagccctcaacccgacccagtcgtaccacacctgccagccccagagtg
acccctgctctagtgaaacggccacgcttccagacactggctcgtttttgggaaggtcag
gatgtcttggcacggtggacagatggactgctttatttgggaatagttaaaaaggtagac
agtgctcaggagacttgtcttgtgcgctttgaagataattcacagttttcagtactttgg
aaggacattttccctcctgctgtgcctgggaaagaacagctgtgctgtgtgtgcaactcg
cagacgtgtaccccagacaacaaactggttcactgtggaaaatgcaaacacgcatatcat
caagaatgccatgttcctagtgtcccatgcgacacagactgtcctgggaactcctggatg
tgtcggcagtgtgtctttgctgtggctaccaagagaggtggcgcactcaagaagggtccc
tatgcacacgctatgctgcatatgaaactgtctttaccctaccagctgaagtctttagag
tgggaccaactacacctaacaaataaacagcaatgttactgctactgcggggggcctgga
gaatggaacatgaagatgttacagtgctgccgttgtctccaatggtttcatgaggcttgt
acgcaatgtctaagtaaacctttgctctatggagacaggttttatgtttttgagtgctca
gtctgtacaagaggtccagaaaacgcttggagacttcctcttgcatgggttgatgtatca
catcttgtcttgtaccacctcagtatttgttgtaaaaagaaatattttgattttgagcgt
gaaattctttccttcgtcaatgaaaactgggatagtttacttctaggagagctgacagac
actcctcgttctgaacggtattctcaccttcttcatgccctgacagctcagaaggatagg
ttcatttctgggaaggaaataaagaaaaagaagtgtctgttcggcctacagacccgtgta
ccacctcctgccccacaaagcacagagtctcagttaagactgcaagaatctaaggataga
acctccactccatgtgtaagttcccttgtagggaggatggggctcatgagacgctccaca
cacaggaagaggacccagagcatagagaagcagacaggaagggagaggcagaagctgtgc
aaagctgttacccaggatgttgtgcagaatccatttagcgctaaccaggagtaccaggga
tatcgtgggagcgcatacaactttaggcgaactggagcacgctgtttgcagaaccctcca
attaggatgttcgcttctttccatccgtccgcaaacacctcagggtctgtggctgcatca
ttgcagtccagtggaatctcttctgaagttcaggaccctccactccttggtgaaatgatg
gaaacttctggtccagcccctgcctcccatgagagcccccaggtcaccccttctttgcct
tcctcatctgtatcttcagagggctgcgcatggcttggatctacagagcaaggaatgcgt
gtgttggcacgcagggtcactgctcagggagcagtggagtaccttgttgaatggggagca
ggagaagtcttttga
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