Xenopus laevis (African clawed frog): 398200
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Entry
398200 CDS
T01010
Symbol
pola1.S, pola, pola1
Name
(RefSeq) DNA polymerase alpha catalytic subunit
KO
K02320
DNA polymerase alpha subunit A [EC:
2.7.7.7
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03030
DNA replication
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
398200 (pola1.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xla03032
]
398200 (pola1.S)
Enzymes [BR:
xla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
398200 (pola1.S)
DNA replication proteins [BR:
xla03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase alpha / primase complex
398200 (pola1.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
zf-DNA_Pol
DNA_pol_B_exo1
DNA_pol_alpha_N
DNA_pol_B_2
DUF1744
Motif
Other DBs
NCBI-GeneID:
398200
NCBI-ProteinID:
NP_001082055
Xenbase:
XB-GENE-1000552
UniProt:
Q9DE46
Structure
PDB
PDBj
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All DBs
Position
2S:complement(29847358..30029062)
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AA seq
1458 aa
AA seq
DB search
MSDSGSFAASRSRREKTEKSGRKEALERLKRAKAGEKVKYEVEQVSSIYEEVDEAEYSKL
VRDRQDDDWIVDDDGTGYVEDGREIFDDDLEDNALADSGKGAKGAPKDKTNVKKSSVSKP
NNIKSMFMASAVKKTTDKAVDLSKDDLLGDLLQDLKSQAVPITPPPVITLKKKKLAGSPL
NPFSVPPTAPKVLPTSVKRLPAVTKPGHPAAQSKASVPRQIKKEPKAELISSAVGPLKVE
AQVKEEDSGMVEFDDGDFDEPMEEDVEITPVDSSTIKTQAQSIKCVKEENIKEEKSSFIT
SATLNESCWDQIDEAEPMTTEIQVDSSHLPLVTGADGSQVFRFYWLDAYEDQYSQPGVVY
LFGKVWIESADAYVSCCVSVKNIERTVYLLPRENRVQLSTGKDTGAPVSMMHVYQEFNEA
VAEKYKIMKFKSKKVDKDYAFEIPDVPASSEYLEVRYSADSPQLPQDLKGETFSHVFGTN
TSSLELFLLSRKIKGPSWLEIKSPQLSSQPMSWCKVEAVVTRPDQVSVVKDLAPPPVVVL
SLSMKTVQNAKTHQNEIVAIAALVHHTFPLDKAPPQPPFQTHFCVLSKLNDCIFPYDYNE
AVKQKNANIEIALTERTLLGFFLAKIHKIDPDVIVGHDIYGFDLEVLLQRINSCKVPFWS
KIGRLRRSVMPKLGGRSGFAERNAACGRIICDIEISAKELIRCKSYHLSELVHQILKAER
VVIPPENIRNAYNDSVHLLYMLENTWIDAKFILQIMCELNVLPLALQITNIAGNVMSRTL
MGGRSERNEYLLLHAFTENNFIVPDKPVFKKMQQTTVEDNDDMGTDQNKNKSRKKAAYAG
GLVLEPKVGFYDKFILLLDFNSLYPSIIQEYNICFTTVHREAPSTQKGEDQDEIPELPHS
DLEMGILPREIRKLVERRRHVKQLMKQPDLNPDLYLQYDIRQKALKLTANSMYGCLGFSY
SRFYAKPLAALVTHQGREILLHTKEMVQKMNLEVIYGDTDSIMINTNCNNLEEVFKLGNR
VKSEINKSYKLLEIDIDGIFKSLLLLKKKKYAALTVEPTGDGKYVTKQELKGLDIVRRDW
CELAKQAGNYVISQILSDQPRDSIVENIQKKLTEIGENVTNGTVPITQYEINKALTKDPQ
DYPDKKSLPHVHVALWINSQGGRKVKAGDTISYVICQDGSNLSASQRAYAQEQLQKQENL
SIDTQYYLSQQVHPVVARICEPIDGIDSALIAMWLGLDPSQFRAHRHYQQDEENDALLGG
PSQLTDEEKYRDCERFKFFCPKCGTENIYDNVFDGSGLQIEPGLKRCSKPECDASPLDYV
IQVHNKLLLDIRRYIKKYYSGWLVCEEKTCQNRTRRLPLSFSRNGPICQACSKATLRSEY
PEKALYTQLCFYRFIFDWDYALEKVVSEQERGHLKKKLFQESENQYKKLKSTVDQVLSRS
GYSEVNLSKLFQTLNTIK
NT seq
4377 nt
NT seq
+upstream
nt +downstream
nt
atgtcagactccggaagtttcgctgcatctcgttcacggcgggaaaaaacagaaaagtcg
ggccgcaaggaagctttggaacgcttgaaaagagcaaaggctggtgaaaaagtcaaatat
gaggtggagcaagtgtccagcatttatgaagaggttgatgaagcagaatactctaagctt
gtccgtgaccgtcaggatgatgattggatagtagatgatgatgggactggctacgtagaa
gatggaagagagatttttgatgatgacttagaagacaatgcccttgctgattcaggtaaa
ggcgctaagggagcacccaaagacaaaacaaatgtaaaaaagtcatcggtgtccaagcca
aataatatcaagtccatgtttatggccagtgctgtgaaaaagacaacagataaagctgtg
gatttgtcaaaagatgatttgcttggagatttattgcaagatttgaagtcgcaggctgtt
cctataacaccaccaccagtaattacactaaagaagaagaaacttgcaggatctccttta
aaccctttctcagtaccacctacagccccaaaggttttacctacaagtgtgaaaagatta
ccagctgtaaccaagcctgggcatcctgctgcacaatcaaaggcttctgtaccccggcaa
ataaagaaagagcctaaggctgagttgatttcttctgctgttggtcctttgaaagtggaa
gctcaagtaaaagaagaggattcgggaatggttgagtttgatgatggagattttgatgaa
cccatggaagaagatgtggaaataactccagttgattctagcacaatcaagacacaagca
caaagcattaagtgtgtgaaagaggaaaatattaaagaggaaaaaagttcattcataact
tctgctactttaaatgagtcttgttgggatcaaattgatgaggctgaaccaatgaccact
gaaattcaggtagattcaagccacctacccttggttactggtgcagacgggagtcaagtt
tttaggttttattggctagatgcctatgaagaccagtacagtcagccaggagtagtctat
ttgtttggaaaagtttggatcgagtcagctgatgcatatgtcagctgctgtgttagtgtg
aagaacattgagaggaccgtatatcttctacctcgtgaaaatagagtgcagctttcaaca
ggaaaagacactggagcaccagtttctatgatgcatgtatatcaggagtttaatgaggct
gttgcagaaaagtacaaaatcatgaagtttaaatccaagaaagttgataaggattacgct
tttgaaatacctgatgttccagcaagctctgaatatctggaggttcgatattctgcggac
tcaccccaacttcctcaggatctaaaaggagaaacattttcacatgtttttggaacaaat
acttcaagcttggagcttttcttgcttagcagaaaaataaaagggcccagctggctggag
ataaaaagcccacaactgtccagtcagcccatgagctggtgcaaggttgaggcagtggtg
acgaggcctgaccaagtgagcgttgtgaaggatctcgcacctcctcctgtcgttgtttta
tctctcagtatgaagaccgtgcagaatgcaaagactcaccaaaatgagattgtggcaata
gctgctttggttcatcacacatttcctcttgataaggcaccaccccagccacctttccaa
actcatttttgtgttctgagcaaacttaatgactgcattttcccatatgactacaatgaa
gcagtgaaacaaaagaatgccaatattgagattgcgttaactgaacgaactctacttggg
tttttcctagcaaaaattcataaaattgatccagatgttattgtaggccatgacatttat
ggttttgatcttgaagtgctgcttcaaaggattaactcatgcaaggttccattctggtcc
aaaattgggagactgagaagatctgttatgccaaaacttgggggtcgaagtggctttgca
gaaagaaatgcagcttgtggacgcataatttgtgatattgagatttctgccaaggagtta
attcgctgtaaaagctatcatttgtctgaattggtacatcagatactgaaagcagagaga
gttgtaatcccacctgaaaacatccgcaatgcatataatgattcagtacatcttctgtac
atgctggagaacacctggattgatgcaaaattcatccttcagatcatgtgtgagctgaat
gttcttcccctggccttacaaatcacaaatattgcaggcaatgtcatgtcaaggacatta
atgggtggacgctcagaaagaaacgagtacctactgcttcacgccttcacagaaaataac
ttcatagtgccagacaaaccagtgttcaagaaaatgcagcagaccactgtggaggacaat
gatgatatgggcacggatcaaaataaaaataagagtcgaaagaaagctgcctatgctgga
gggttggtcctggaacccaaagtgggtttctatgacaaattcatcttgcttctcgatttc
aacagtttgtacccctccatcattcaggaatacaatatctgctttactacagtgcacaga
gaggctccctcaacacagaaaggtgaagatcaggacgaaattccagagctacctcattcc
gatcttgaaatggggatcttgcctcgagagatacggaaactggtggagaggaggcgtcac
gtgaagcagttaatgaagcagcctgacctaaaccctgatttatacttgcagtatgacatc
agacaaaaagctctgaagctcacagcaaatagcatgtacggatgcctgggcttttcctac
agcaggttttatgccaaacctttggctgcgttggttactcaccaagggagagagattttg
ctgcataccaaggaaatggtacaaaagatgaatctggaagtcatatatggagacaccgat
tctatcatgataaacactaattgtaataatttagaagaagtcttcaagctcggaaaccgg
gtaaaaagtgagataaacaaatcatacaagctgttggagattgacattgatggtatcttt
aaatctctcttgctactgaagaaaaagaagtatgccgctcttacagtggagcccacaggt
gatggaaagtatgttactaagcaggagcttaaaggtcttgatattgtcagaagagactgg
tgcgagcttgctaaacaagctggaaattatgttattagtcagattctctctgaccagccg
cgtgatagtattgttgaaaacattcagaagaaattaactgaaattggggaaaatgtaaca
aatggaactgtgcccatcacccagtatgaaatcaataaggcattgacaaaggatcctcag
gattaccctgataaaaaaagcttaccccatgtacatgttgccttgtggataaattcccaa
ggtggaagaaaggtgaaagctggcgatacaatatcctatgtcatttgtcaggacggatca
aatcttagtgcgagtcagagagcatatgcccaagagcagctgcaaaaacaagagaacctt
tccattgacacacaatactacctgtcacagcaagtccacccagtagtggctcggatctgt
gagcccattgatggaattgattctgcactaattgcaatgtggttaggacttgacccttcc
cagttccgggctcaccggcactaccagcaggacgaggaaaatgatgcattgctgggaggt
ccttcccaactcacagatgaggaaaaatacagagactgtgaacggttcaaattcttctgc
ccaaagtgtggaacggagaacatttatgacaatgtttttgatggctctggactgcagatt
gaaccgggcttgaagcgctgcagtaaaccagagtgtgatgcttctcccttggactatgtt
attcaggttcacaacaagctgctcctggacataagacgatacataaagaaatactacagt
ggttggctggtttgtgaagaaaaaacctgccagaacagaacacggcgtcttccactaagt
ttctcccgcaatgggccaatatgccaagcttgttctaaagcaacccttagatcagagtat
ccagaaaaggccttgtacactcagctttgtttctatcgatttatttttgactgggattat
gcactggagaaagtcgtgtctgaacaagagagaggtcacttaaaaaagaagctttttcaa
gaatctgaaaaccagtacaagaagttaaagagcaccgttgaccaagtactttcccggagc
ggatattcagaagtgaacctcagcaagctgttccagacactcaacaccattaaataa
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