Xenopus laevis (African clawed frog): 398215
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Entry
398215 CDS
T01010
Symbol
ptch1.S, patched, patched1, Ptc-1, ptc1, ptch1, X-ptc1, XPtc1
Name
(RefSeq) patched 1 S homeolog
KO
K06225
patched 1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
398215 (ptch1.S)
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Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
Motif
Other DBs
NCBI-GeneID:
398215
NCBI-ProteinID:
NP_001082082
Xenbase:
XB-GENE-865776
UniProt:
Q98SW6
A0A974DU49
Structure
PDB
PDBj
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All DBs
Position
1S:complement(125770807..125849379)
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AA seq
1418 aa
AA seq
DB search
MASAACAAELGASGEAAAQPRVVRRRGRSRRVAPPDHDYLQRPSYCDANFALQQISEGKA
IGRKAPLWLRAFFQRQLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLRAANLETNVEELWV
EVGGRVSRELDYTRQKIGEEAMFNPQLMIQTPLEDGANVLTTEALLQHLHSALEATKVQV
YMYNKPWKLEELCFKSGELITEAVYVSQIIDSMYPCLIITPLDCFWEGAKLQSGMAYLPG
KDILQWTNFDPLELLEELKKGKLHIDIWEEMINKAEVGHGYMDRPCLNPSDKNCPYTAPN
KNSTKPVDVSLILSGGCYGLSKKYMHWQEELIIGGTVKNASGQIVSALALQTMFQLMTPK
QMYEHFKGHEVVSHMNWNEDKAAAILEAWQRTYVQVVHQSVPQNSSQKVLPFTTTTLDDI
LKSFSDVSVIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVALSVAAGLGLCSL
IGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVAL
TSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREVRRLDI
FCCFSSPCVSRVIQIEPQAYTDNNDNTRYSLPPTYSSHSFAHETQITMQSTVQLRTEYDP
RTQLYYTTAQPRSEISVQPAASTPQDVSGQTPESTSSTRDLISQFSVHGGSMQCTPDSKW
TLSSFAEKHYAPFLLKPKTKVAVILGFLALLSVSLYGTTRVRDGLDLTDIVPRETREYDF
IATQFKYFSFYHMYVVTQKADYPRAQRLLYELHKSFVGVRYVLLEGNKQLPKMWLHYFRD
WLQGLQDTFDHEWEAGKITRNDYRNASDDAVLAYKLLIQTGNSDKPINLNQLTKQRLVDA
DGIIQPNAFYIYLTAWVSNDPVAYAASQANIRPHPPEWLHDKADDRPETRTIRAAEPIEY
VQFPFYLNGLRETSDFVEAIEKVRAICNNYTSLGVSSYPNGYPFLFWEQYISLRHWLLLS
ISVVLACTFLVCALFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSAVPVVILIASVG
IGVEFTVHVALAFLTAVGDKNRRAVLALEHMFAPVLDGAVSTLLGVLMLAGSEFDFIVRY
FFAVLAILTLLGVLNGLVLLPVLLSFFGPYPEVSPTNGGDRLEVSQDPPPNIVRFPEHPR
PTQNGSDSSDSEYSSQTSVSGISEELHQYNSQQCSAAVFPRPTVVQQNSRHNPPNQSTPP
NKEARTQQQWCSNRNQRWDSTEGSRPPPYRPRRDAFASFTEEHAGPSTRDRSGHRSHSHN
MRQTAFAPGGASVPAYGQPITTVTASASVTVAVHPSVCSHSSYGSYPFYSGYHENDHGHF
EDPHVPINVRYERRDSKVEVIELQDVECEERTQGNASK
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggctgcctgtgccgcggaactgggtgctagtggggaggcagctgcccagccg
agggtagtcaggaggagaggaaggagcaggagagtagcgccgcctgaccacgactatctg
cagcggccgagctactgcgatgccaatttcgcccttcagcagatatcagaggggaaggct
ataggaagaaaagctccattgtggctaagagcattctttcaaagacaattgtttaaactt
ggttgttacatacaaaaaaactgcggaaaatttctggttgtgggccttttaatatttggt
gctttcgctgtaggattaagagcagctaatttagagaccaatgtggaagagctgtgggtt
gaagttggtggaagagtaagccgtgaattagattatacccgccagaagataggggaggag
gctatgtttaatccacagcttatgattcagactcctcttgaagatggtgctaatgtcctg
acaacagaagctctcctgcaacatctgcactctgcacttgaagccaccaaggtgcaagtc
tacatgtacaacaaaccttggaaattggaagaattatgctttaaatcaggtgaacttatt
acagaagcagtgtacgtgagccagattatagattcaatgtatccttgtctaatcatcaca
ccactggattgcttttgggaaggtgcaaagcttcagtctggaatggcatatctaccaggt
aaagacattttgcaatggacaaactttgaccctttggagttgctggaagagttaaagaaa
ggaaaacttcatatagacatctgggaggaaatgataaacaaggcagaagtaggccacggt
tatatggacagaccttgtttgaacccatcggataagaattgtccatacactgcacccaac
aaaaattcaaccaaacctgtagacgtatcccttattctaagtggtggatgctatggactg
tcaaaaaaatatatgcactggcaagaggaactgatcattggtggcacggtgaagaatgct
agtggtcaaattgtcagtgccctggctttgcagaccatgtttcaactgatgacccccaaa
caaatgtatgagcacttcaagggtcatgaagtagtttcccacatgaattggaatgaagac
aaagcagctgcaatcttggaggcctggcagaggacctatgttcaggttgtacaccaaagt
gtcccacaaaactcctcacagaaagttctcccttttactacaactacactggatgatatt
ctcaagtcattctcagatgtgagcgttatcagagttgcaagtggctatctgctgatgctt
gcctatgcctgtttaaccatgctgaggtgggactgtgccaagtcccagggtgccgtgggg
ctagcaggagtcttgctggttgcgctttcagtggctgctggattgggtctatgttcattg
attggaatttcctttaatgcagcaacaactcaggttttgccttttctcgctcttggggtt
ggtgtagatgatgtcttccttttggcacatgcttttagtgaaaccgggcagaataaaaga
attccatttgaggacaggactggtgagtgtctaaagcgcacaggagcaagcgtagccctt
acatctattagcaatgtgactgctttcttcatggctgccttgatacctattcctgcattg
cgggcattttccctccaagctgctgttgttgtggtgtttaattttgccatggtcctgctg
atatttcctgctatacttagcatggacctctatcgcagggaagtccgcagacttgatatc
ttctgttgcttcagcagtccttgcgtgagcagagtgattcagattgagccccaggcctat
acagacaataatgacaatacacgctacagcctgcccccaacctacagcagtcacagcttt
gcacatgaaacacaaatcacaatgcagtcgacagtccagcttcgtaccgaatatgatcca
cgaacacaattgtattacaccacagcacaacctcggtcggaaatatccgtgcagccagca
gcatcaacccctcaggatgtaagcggtcagactccagagagcaccagttccactagagac
ctgatttctcagttctctgtacatgggggctctatgcagtgcacaccagattcaaagtgg
acattgtcttcctttgcagaaaagcactacgccccattcctgttaaaaccaaaaactaaa
gttgctgtcatattgggtttcttagccttgcttagtgtcagcctttatggaactacacga
gtgcgagatggccttgatttgacggacattgtaccaagggagaccagggaatatgacttt
attgcgacacagttcaagtacttttcattttaccacatgtatgtggttacacagaaagca
gactatcctcgagcccagcgtttgctttatgaacttcacaaaagctttgttggtgtgaga
tatgtgctgctggagggtaacaaacagttgcctaagatgtggctgcattactttcgggac
tggctgcaaggactgcaagatacgtttgaccatgaatgggaggctggaaaaattacacgt
aatgattatagaaatgcttctgatgatgctgtccttgcttacaagctcctgatacagaca
ggcaattctgataaacccattaacctcaaccagctgactaaacagcggttggtggatgca
gatgggattattcagccaaatgctttctacatctacttaacagcctgggtgagtaatgac
cctgtagcctacgctgcttcccaggccaacatccgcccacaccctcctgagtggctccac
gacaaagcagacgataggcctgagaccaggacaattcgtgcagctgaaccaatagaatat
gtccagtttcctttctacctcaatggtctgcgggaaacatccgactttgtggaggctata
gaaaaagtgagggcaatctgtaacaactacacaagccttggggtgtcgagctacccaaac
ggctaccctttcctgttctgggagcaatacattagtctccgtcactggctgctgttgtcc
atcagtgtggttctggcctgtacctttctggtgtgtgctctctttctcctgaacccttgg
actgctggaatcattgtcatggtgttagcccttatgacagtggaactgtttggcatgatg
ggactaatagggattaagctgagtgcggtgcctgtagttatcttgatcgcctcagttgga
attggagtggaattcactgttcatgttgctttggcattcctcactgctgtcggggacaag
aatcgcagagctgttcttgctttggagcacatgtttgcacctgtcctggatggggctgtc
tctactttattaggcgttctgatgcttgctggatcagaattcgactttattgtcaggtac
ttttttgctgtcctggcaattctaactcttttgggtgtactaaacgggttggtgctactt
cctgtacttctgtctttctttgggccttatcctgaggtctctccaactaatggcggagat
aggcttgaggtttctcaagacccaccaccaaatattgtaaggttccctgagcatcctaga
ccgacacaaaatgggtcggattcctcagattccgaatatagttctcaaacctctgtatcg
ggaatcagtgaagagctccaccaatataattctcagcagtgttctgcagcagtctttcct
cggcccactgttgtacagcaaaacagtaggcataatccaccaaatcaaagcacaccaccc
aacaaagaagccagaactcaacaacaatggtgttccaacagaaatcagagatgggattca
acagaaggatcacgcccacctccatacagacctcgcagagatgcatttgcatcttttact
gaagagcatgctggtcctagtaccagggacaggtcagggcacagatcccactcccataac
atgcgacaaactgcctttgctccaggaggtgcttcagtacctgcgtatggccaacctatt
actactgtgactgcctctgcttcagttactgttgctgtgcacccttctgtgtgcagccac
agttcctacggtagctatcccttttacagtggctaccacgaaaatgaccatggacatttt
gaggaccctcatgtgcctattaatgtacgctatgaaagaagggactctaaagtagaagta
atagagctgcaagatgttgaatgtgaagaaaggacacaaggaaatgcctcaaaataa
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integrated database retrieval system
