Xenopus laevis (African clawed frog): 398242
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Entry
398242 CDS
T01010
Symbol
bard1.L, bard1
Name
(RefSeq) BRCA1 associated RING domain 1 L homeolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
398242 (bard1.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
398242 (bard1.L)
04121 Ubiquitin system [BR:
xla04121
]
398242 (bard1.L)
03036 Chromosome and associated proteins [BR:
xla03036
]
398242 (bard1.L)
03400 DNA repair and recombination proteins [BR:
xla03400
]
398242 (bard1.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
398242 (bard1.L)
Ubiquitin system [BR:
xla04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
398242 (bard1.L)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
398242 (bard1.L)
DNA repair and recombination proteins [BR:
xla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
398242 (bard1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank
Ank_2
Ank_4
Ank_5
BRCT
Ank_3
BRCT_2
zf-RING_5
Ank_KRIT1
zf-C3HC4_2
zf-C3HC4
RTT107_BRCT_5
zf-RING_UBOX
zf-rbx1
PPV_E2_N
Motif
Other DBs
NCBI-GeneID:
398242
NCBI-ProteinID:
NP_001082131
Xenbase:
XB-GENE-492039
UniProt:
Q90X95
LinkDB
All DBs
Position
9_10L:84506718..84543690
Genome browser
AA seq
772 aa
AA seq
DB search
MLLRVRSGNRPSETAVREELPMMDEPGWERTRDALREMERKLCCSKCMFILKDPVCLGGC
EHVFCWTCVNENLGNECPLCNTPAWVRDVQVNRQLDNMIQLCAKLRNLLSMGKTDENKMD
LCQDTLLRLNPAQEKQKKKQIKMWFSPRSRKVRCVVEKKEKSQQISSKTLPQMASYEFVS
DSPDGEPAQKKPDPKPRKRMKKKLKDINAEWGVDTENEIDEVSNPRKEHKSGKSVSFCSS
AVIQHSPEVLVVESSLKNDTPEEISPNWNKCGLDEPMEMQSTSMKEVNCPSPSEQSTTLK
TQDKEKKITTVKRKKHSSPIASSKRPRRRSSDTSKPLNDSDIKANSPEKACKTVSPHKPS
ENSAKDVRIESTQAAKRDTKMCSTPLPCAKQNNSAKLGQKSTAMPISPNNLTNVKRNYKG
ETMLHLASIKGDIQGVEDLLNSGANPNVKDNAGWTPLHEACNLGHTMVVQLLLQHHALMN
TTGYQNDTPLHDAVKNGHIAIVKLLLSHGASRDAVNIFGLQPVDYAETEEMKSVLLETQT
ERDRLLLHPCLAAPQLSSHQRKEEAVVLIASGLLATQRADLTKLAKMLKASICAEYDSTV
THVIVSDEPVLRTMKCMMGILAGCWTLQFSWVKACLQSCNREPEESYEIPHGPHRARLNG
QQMLPQLLDGCHFYFLGCFTEHRKEDLIELVKAAGGQILIRQPKPDSDVTQTINTVAYHA
EADSDQRFCTQYIVFDRASKYRPERVRQGKVWFAPSSWIIECITSFQLLPVH
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgctgctaagggtgcgctccgggaaccggccttctgaaacggcagttagggaagaacta
cctatgatggatgagccgggctgggagcggacacgggacgcgcttcgggaaatggagaga
aagttgtgctgctccaaatgcatgtttatactgaaggatcctgtgtgtttgggtggatgc
gaacatgtattttgttggacatgtgttaatgaaaaccttggcaatgaatgcccactgtgt
aacacacctgcgtgggtgcgtgatgtacaagtaaaccgacaactagacaacatgatacag
ctgtgtgctaaactgcgaaacttgttgagcatgggaaaaacagacgaaaacaaaatggat
ttatgtcaggatacattgctcagactaaatcctgctcaagaaaaacagaagaaaaaacaa
ataaagatgtggtttagcccccgatccaggaaggtgagatgtgtagtggaaaaaaaagag
aagagccaacaaatttcatcaaaaactcttccacaaatggcatcgtacgagtttgtttcg
gattctcctgatggtgagcctgcgcaaaagaaacctgatccgaaacctaggaaaaggatg
aaaaaaaagttgaaagatattaatgcagaatggggtgttgatacagagaatgaaatagat
gaggtatctaatccaagaaaagaacacaagtcgggtaaatctgtttcgttttgtagctct
gccgtcattcaacatagtccggaggtgctggtggtagaaagcagcttgaagaatgacaca
ccagaagaaataagccctaattggaacaagtgtggcctggatgaacctatggaaatgcaa
tcaaccagtatgaaagaagtgaactgccccagtccaagtgaacaaagcaccacgttgaaa
acccaagacaaagagaaaaaaataactaccgtgaaacggaaaaaacactcatcccctata
gcttcttcaaagcggccaaggagaaggtctagtgatacctcaaagcctttgaatgacagc
gacataaaggcaaactcacctgaaaaagcctgtaaaacagtgtctccacataaaccttct
gaaaattctgcaaaagatgttcgaatagaaagcacgcaggccgcaaaacgggatactaaa
atgtgctccacgcctttaccctgtgcaaaacagaacaatagtgccaaattggggcaaaaa
agtacagcaatgccgatatcgccaaataatttgacaaatgtcaaaagaaattacaaagga
gagaccatgttgcatttagcatcaattaagggtgatattcaaggagtggaggaccttctt
aatagtggggcaaatcctaatgtgaaggacaatgctggctggactcctctgcatgaagct
tgcaatcttggacacacaatggttgttcagttgctccttcagcaccatgccctaatgaac
actacaggttaccagaatgatacaccacttcatgatgctgtgaaaaatggccacatagcc
attgtcaagctacttctgtctcatggagcttcccgggatgcagttaatatattcggtctg
cagcctgtagactatgcagaaacagaggagatgaagtcggtattgctggaaacccagaca
gagagagatcgacttttgttgcatccatgccttgcagctccacagctgagctcacaccag
cggaaagaagaagcggttgtgctaatagccagtgggctgctggccactcagcgtgccgat
ctgaccaagcttgcgaaaatgctgaaagctagtatttgtgctgaatatgacagcacagtt
acacatgtgattgtgagcgatgagcctgtgcttcgaaccatgaaatgcatgatgggtata
ttagctggatgctggacgcttcaattttcttgggtaaaagcctgcttgcaatcatgtaat
cgagaaccagaagagtcatatgagattcctcatggaccacacagagcacgactaaacgga
caacagatgctgccccagctgttggatggatgccatttctactttcttggctgttttaca
gagcatcgcaaagaagacctcattgaacttgttaaagctgctggtgggcaaatccttatt
cgtcagcctaaacctgatagtgatgtaacacaaaccattaacacggtggcataccatgca
gaagcagattctgatcaacggttctgcacacaatatattgtgtttgacagagcttccaag
taccgtcctgagagagtgcgccaggggaaagtttggtttgccccttccagttggataatt
gaatgcatcaccagctttcaactgttacctgtgcactag
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