Xenopus laevis (African clawed frog): 398292
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Entry
398292 CDS
T01010
Symbol
col18a1.S, kno, kno1
Name
(RefSeq) collagen type XVIII alpha 1 S homeolog precursor
KO
K06823
collagen type XVIII alpha
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xla04147
]
398292 (col18a1.S)
00535 Proteoglycans [BR:
xla00535
]
398292 (col18a1.S)
00536 Glycosaminoglycan binding proteins [BR:
xla00536
]
398292 (col18a1.S)
Exosome [BR:
xla04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
398292 (col18a1.S)
Proteoglycans [BR:
xla00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
398292 (col18a1.S)
Glycosaminoglycan binding proteins [BR:
xla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
398292 (col18a1.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Motif
Other DBs
NCBI-GeneID:
398292
NCBI-ProteinID:
NP_001082208
Xenbase:
XB-GENE-17337214
UniProt:
Q8QHL9
LinkDB
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Position
9_10S:71732734..71845438
Genome browser
AA seq
1315 aa
AA seq
DB search
MILRCTWVLLLYAAYHALLVSSQGKDNFGLEVGLLQLIGEPVPSQITKVLGPDKTPAYVF
DKEANTGQVAQYHLPNPMYRDFSLLFHVQPTTNKAGILFAITDASQXIVYIGVKLSEAKD
GKQDIIFYYTEPGSRDSYIAATFNVPSLVNRWSRFSISVEDEEVVLFMNCDEMERVRFER
SPDEMELEDGSGLFVAQAGGADPDRYQGVIADLKIVADPRAAEQQCEDDGDDSDGISGDF
GSGIADNDLVTASPPVVIKVQPPINVPPIQKNPVEKEIVQTGQGQQGIKGEKGDRGEKGE
RGLTGPKGDSASVSLASDSKAEKGQKGEVGFKGSAGFGYPGPKGQKGDPGIMGPRGHPGP
PGPSVLQKSDGTTVQQVTGPPGPQGPAGPPGNDGEPGDPGEDGKTGEVGPQGFPGTPGDI
GQKGEKGDSGVGMRGPSGPPGPPGPPGPSRMDKLTFIDMEGSGYGGDLENVRGPSGLPGP
PGPPGVPGLPGVPGTFGMNNTGLPGPPGLPGLPGKEGFPGPPGPSGPPGKDGLTGAAGVA
GIRGEDGEIGLPGAPGVKGSPGEPGQPGAVGQPGLAGLPGPMGPRGLPGPPGPPGPVGRG
SAIGFDDMEASGLGFGPREGTQGLSGLPGAKGEQGNPGMPGLPGVKGESGSPGPEGRQGL
DGFPGLEGLKGEKGEHGERGEPGRDGVGIPGPPGPPGQVLYLPSDDKSAVGAISGPEGRQ
GVAGLPGPRGPKGDQGLDGFPGTSGAKGERGEPGLIMRPDGTIYTDLSKAEKGEQGPTGP
AGSVGPSGQKGEIGFPGRPGRPGMNGLKGEKGDPASGGFGLNGPPGPPGPPGPPGSVVYG
DPNIPRAYPGQKGERGFPGPKGDVGPAGPPGSFPYDLSTFASILTREAGLKGEKGEPGGG
DNGQGIPGPSGNPGYPGLPGAKGESVQGPPGPAGPPGHPGTGYEGRQGPPGPPGPPGLPG
SSSSYPGPHRQTISIPGPPGPPGPPGLPGTSGGLSGATVLQTYQTMINLAHRLQEGTIVL
VQERAELYVRVREGFRKILLGEYSALSGPGQDNEVAAEQAPVVPYPHRNKDSDYLQSTEE
NSNNANVPSGARPWSDPRLPEPPRVDPPRVDPPPPDHHHHGNPHPLEPSPVHTHQQFNPA
LHLVALNAPLSGSMKSIRGVDFQCFEQARKSGLHGTFRAFLSSRLQDLYSIVRRADRQSV
QIVNLRDEVLYDNWESLFSGSEAQMRPGARIFSFDGKDVATDPTWPQKMVWHGSDAKGRR
LTESYCETWRTDESAVTSQASSLTSGKLLEQRPQSCNKNFIVLCIENSFMTNNRK
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atgattctcaggtgtacgtgggtcctgttgctctatgctgcatatcatgcgctcctggtc
tcctctcaaggcaaagacaacttcggcctggaagttggcctcttgcagttgattggagaa
cctgtacctagtcagatcaccaaagtgcttgggcccgacaagactcctgcctatgtattt
gataaagaagccaatacaggtcaggtggcccaataccatctgcccaatcccatgtatagg
gatttctctcttctcttccatgtccagccaacaactaacaaggccggcatcctgtttgcc
atcactgatgcctctcagnccattgtgtatatcggggtgaagctttctgaagccaaggat
gggaaacaagacatcatcttctactacacagagcctggctcacgggattcctacatagct
gctaccttcaatgtcccatcactggtgaatcgatggtctcgcttttcaatcagtgtggag
gatgaagaagttgtactgttcatgaattgtgatgaaatggaaagggtgcgcttcgagaga
tctcctgatgagatggaactagaagatggctctgggctctttgttgctcaggcaggtggt
gctgatccagatcgatatcagggtgtcatagcagatctaaagattgtagctgatccaaga
gcagcagaacaacagtgtgaagatgatggcgatgactctgatgggatctctggagatttt
ggcagtggtattgcagataatgatttggtgacggcttctcctcctgtggtcatcaaagtg
cagcctcctataaatgtccctcccatacaaaagaaccctgtggagaaagagattgttcag
actggtcaaggtcagcaagggattaaaggagagaagggtgatcgtggagagaagggtgag
aggggactgactggtcctaagggagacagtgcaagtgtgagccttgcttctgattccaaa
gcagaaaagggccagaaaggagaggtcggattcaagggaagtgcaggctttggttatcct
gggcctaaagggcagaaaggagatcctggaatcatgggaccaagaggacatccaggcccc
cctggaccatctgttttacaaaaaagtgatggaactacagtacagcaggtcacaggacct
ccaggtcctcaaggcccagcaggaccgccaggaaatgacggggaaccaggtgatccaggt
gaagatggaaaaaccggtgaagttggtccacaaggatttccagggacccccggtgatatt
gggcagaaaggagaaaagggtgattctggtgttggtatgcgaggtccttctgggccacca
ggtccaccaggcccccctggaccttctagaatggacaagctgacattcattgacatggaa
ggttctggatatggtggagatttggaaaatgtcaggggaccctctggtttacctgggccc
ccaggtcctccaggtgtacctggtttacctggagtacctggaacttttggaatgaacaat
acaggattaccaggtccacctgggttgccaggtcttccaggaaaggaaggatttccaggt
cctcctggcccttcaggaccccctggaaaagatggattaactggtgcagctggtgttgct
ggaatacggggtgaagatggagagattggtcttccaggggcccctggagtaaagggtagc
cctggtgagccaggacaacctggagccgttggacaacctggtttagctggacttcctgga
ccaatgggacctcgtgggctaccaggtcctccaggaccacctgggcctgtggggcgtggc
tctgcaattggctttgatgacatggaagcatcagggcttgggtttggcccaagagaaggg
acacaggggctttctggacttcccggggcaaagggagagcaaggaaatccagggatgcca
ggattaccaggagtgaagggagaaagtggttctccaggccctgaaggaaggcaagggttg
gatggcttcccaggtctagagggattaaaaggtgaaaaaggtgaacatggtgagcgggga
gaacctggtcgtgatggtgttggtattccaggtccacctggacctcctggacaggttctt
tatttaccatcagatgacaagagtgctgttggtgccatttcaggaccagagggcaggcaa
ggtgtagctggacttccgggcccaaggggacccaaaggagatcagggcttggatggtttc
ccaggaacttctggagcaaagggagaaaggggagaacctggacttattatgagacccgat
ggcaccatttatactgacctatcaaaagcagagaagggcgagcaagggccaacaggacca
gcaggctctgtgggaccatctggacaaaagggagaaatcgggtttccaggacgccctggt
cgtcctggtatgaatggactgaaaggggagaaaggagatcctgcaagtggtggctttggc
cttaatgggcctcctggacctcctggccctcccggtcctcctggcagtgtggtgtatgga
gatccgaatatcccaagagcatatccaggccaaaaaggggagagaggatttcctggaccc
aaaggtgatgttggtcctgctggcccaccaggttcattcccctatgatttaagtaccttt
gcctcaatcttaacgagagaagctggactcaaaggagagaagggtgaacctgggggtggt
gacaatggacaggggatcccagggccatctggaaaccctggatatccaggactaccggga
gctaaaggagaaagtgtccaaggtcctcccggcccagctggcccaccaggacatcctgga
actggttatgaaggacggcaaggtccaccagggcccccaggtccaccaggcttaccaggc
tcctcctcctcataccctggccctcacaggcaaaccatcagtatacctggacctcctggc
ccaccaggcccaccaggtctaccaggaacatcaggaggattgtccggggctactgtgctg
cagacctatcagactatgatcaacttagcccacagactgcaggaagggacaattgtgctg
gtccaggagagggcggagctgtatgtgcgtgtgagagaaggcttccggaaaattcttctt
ggtgaatattcagcactctctggcccgggacaggataatgaagttgctgcggaacaagcc
cctgtagttccatatccacaccgtaacaaagattcagattaccttcagtctacagaggag
aacagcaacaatgcaaatgttccttcaggtgcccgaccctggagtgatccccgactccca
gagccaccaagagtagatccaccaagagtagatccacctcctccagaccatcaccaccat
ggaaaccctcatccactggaaccatcacctgtgcacactcaccaacagtttaatcctgcg
cttcacttggtggctctgaacgctcctctgagtggcagtatgaaatccatccgaggagtg
gacttccagtgcttcgagcaggcccgcaagtctggactacatggcacatttagagcattc
ttgtcctcccgacttcaggatctgtacagcattgtacgcagagctgataggcaatctgtg
caaatcgttaatctcagggatgaagtgttgtatgacaactgggagtcactgttttctggt
tcggaagctcagatgaggcctggtgcacgtatcttctcttttgatggaaaagatgttgca
acggaccctacatggccacagaagatggtttggcatgggtcagacgctaaagggcggcga
cttactgaaagctattgcgagacctggcgcacagatgaaagtgcagtgactagtcaggct
tcatcgctgacaagtgggaaactcttagaacagcgcccacagagctgcaacaagaacttc
attgttttgtgtatagagaacagcttcatgactaataaccggaagtag
DBGET
integrated database retrieval system
