Xenopus laevis (African clawed frog): 398348
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Entry
398348 CDS
T01010
Symbol
sdc1.L
Name
(RefSeq) syndecan-3
KO
K06257
syndecan 1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04512
ECM-receptor interaction
xla04514
Cell adhesion molecules
xla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
398348 (sdc1.L)
04514 Cell adhesion molecules
398348 (sdc1.L)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
398348 (sdc1.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xla04131
]
398348 (sdc1.L)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
xla04090
]
398348 (sdc1.L)
00535 Proteoglycans [BR:
xla00535
]
398348 (sdc1.L)
Membrane trafficking [BR:
xla04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
398348 (sdc1.L)
CD molecules [BR:
xla04090
]
Proteins
398348 (sdc1.L)
Proteoglycans [BR:
xla00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
398348 (sdc1.L)
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Glycophorin_A
Motif
Other DBs
NCBI-GeneID:
398348
NCBI-ProteinID:
XP_018119533
Xenbase:
XB-GENE-6251594
UniProt:
A0A1L8GBM5
A0A974CYU6
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All DBs
Position
5L:complement(154550393..154597366)
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AA seq
607 aa
AA seq
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MDKLLAALCLLGMCCSLAVTDVSVRSSPLDLEASGDDEDFSGSGIDDLDVDHVVPSTSAL
PSVLSAVPNFVQENTSPNAKVDEKDTAAEHTTRVVETTKPSEDPVEELVEPVFVGVGHDA
ESTSPEATTHKPTTHRPTTVKSTAGPMESITEQNHHPHHHHHHHHHHHQNHTTTAKPTSA
TDQHVDNSDSPSGEDKSYIHHKVTTTSPIDNEEPDLHEADHRLTTIKPRNTEELINHHVP
DQDSPSGSSSTPYMEFEETTEDPSGARVHNVLIGHDEKTTTKPSENEEGDGMFAGHHEKP
TTTSPSNEEGSHIQHDTTTSSPSHHAEPDVEVHHSTTPADMNKHHHHHHHHPHHHTTPEA
ITSVDEEIPHHVGDSTTPSDLNKHHHHHHPHHHTTSETTTSVDEVPHHVDDSTTPSDLNK
HHHHHHPHHHTTPETTKTTTSQTKHSAEVSTVVHKGRMAHGASATSAVPALDDLVDLTTS
VVLEEGDSDPADSKEDESSGEKEEDNFFFVNREVIQKGTAPPIHRMINNDVSDNESTSDA
SHGIMERKEVLAGIIAGGVAGLAFAVFLVGFMLYRMKKKDEGSYSLEEPKQSNGGYQKPR
AQREFYA
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggacaagttactggctgccctgtgcttgctgggaatgtgctgctcgctggctgtaacg
gatgtgagcgtgagatcctcaccgttggatctagaagcatcaggagacgatgaggacttc
tctggctcaggaattgatgatctagatgtagaccatgtagttccttctacatctgcgttg
ccttctgtgttgtctgctgtgcccaattttgtgcaagaaaatacatcaccaaatgccaag
gtagatgaaaaggatactgcagcagagcataccaccagagtagtggagacaactaagcca
agtgaagatcctgttgaggaattggttgaacctgtttttgttggtgtaggacatgatgct
gaatcaacttctcctgaagcaaccacacacaaacctactactcaccgtccaaccactgtg
aaatccacagctggcccaatggaaagtatcacagaacaaaaccatcaccctcatcatcat
caccaccatcatcatcatcaccaccaaaatcatacaaccacagctaaaccaacttctgcc
actgatcaacatgtagataactctgatagtccatcgggtgaggataagtcttacattcac
cacaaagtaacaactacaagtccaatagacaatgaggaacctgatctgcatgaggctgac
cataggttgaccaccataaaaccaaggaacacggaggaactaattaatcatcacgttcct
gatcaagactctccatctggatcgtctagtacaccttatatggaatttgaggagacaact
gaagatccttccggtgctcgagtacataatgtgcttattgggcatgatgaaaagacaact
acaaaaccttctgaaaatgaggagggtgatggtatgtttgcaggtcatcatgagaagccc
acaaccacaagtccatctaatgaggaaggttcccatatccagcatgatacaacaacttcc
agtccatcccaccatgctgagcctgatgtagaagtgcatcacagtacaacacctgcagat
atgaataaacatcatcatcaccatcaccaccatcctcatcatcatactactccagaagca
atcacttcggttgatgaagaaatacctcatcatgtaggtgacagtacaacaccttcagac
ctgaataaacatcaccaccaccaccatcctcatcatcatacaacttcagaaacaaccacg
tcggttgatgaagtacctcatcatgtagatgacagtacaacaccatcagacctgaataaa
catcaccaccaccaccatcctcatcatcatacaactccagaaaccaccaaaactactaca
agccagaccaagcactcagctgaagtttccactgttgtgcataagggaaggatggcccat
ggtgcttcagcaactagtgctgttcctgcattggatgatctagtagacttgacaacctcc
gttgttctagaagagggtgattctgaccccgctgactctaaagaagatgaatcatcaggg
gaaaaggaagaggataatttctttttcgttaatcgtgaagttatccaaaaggggaccgcg
cccccgatccacaggatgataaataatgacgtttctgataatgaaagcacttccgatgca
tcccatggaataatggagaggaaagaagttttagcaggaatcattgcaggaggtgtggcc
ggcttggcgttcgcagtcttcttagttgggtttatgctctataggatgaagaaaaaagac
gaaggaagctactctttggaggaaccaaaacaatcgaacggaggataccaaaagccacgt
gcacaacgggaattctacgcgtag
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