KEGG   Xenopus laevis (African clawed frog): 398437
Entry
398437            CDS       T01010                                 
Symbol
plod1.S
Name
(RefSeq) procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 isoform X2
  KO
K00473  procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 [EC:1.14.11.4]
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla00310  Lysine degradation
xla01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:xla00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00310 Lysine degradation
    398437 (plod1.S)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:xla04147]
    398437 (plod1.S)
Enzymes [BR:xla01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.4  procollagen-lysine 5-dioxygenase
     398437 (plod1.S)
Exosome [BR:xla04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   398437 (plod1.S)
SSDB
Motif
Pfam: 2OG-FeII_Oxy Anp1 2OG-FeII_Oxy_3
Other DBs
NCBI-GeneID: 398437
NCBI-ProteinID: XP_018083181
Xenbase: XB-GENE-17334813
UniProt: A0A1L8FFL3 A0A974CD07
LinkDB
Position
7S:53954412..54002276
AA seq 722 aa
MGVMLLPLLLWVLVILPRWGNCANPDDDNLLVLTVATEETEGLRRFQRSAHSFNYKVKVL
GLGEEWLGDGQKIQLMKLALEPYSDKEDLIILFTESYDVIFASGHGELLKKFRQAKSKVV
FSAESVAYPDRHLESKYPVVREGKRYLGSGAFIGYAAHLYKMVADWDGTDKSSDQLFYTK
LFLDPVKRGKINITLDHRCRIFQNLYGSAEDVVLKFEYGRVRARNLVYDTLPVLIHGNGP
TKLHLNYLSNYIPRVWTFESGCNVCDEGLRNLDGLTVDTLPLVVIGIYIEQPTPFVSEFF
KRLNNLNYPKNRIQLYISNHEPHHQKRVEHFLQDHGTQYNFVKTVGPEENSDFADARNKG
MDMCRQTPECEYYFSIDAPVVLKNTNVLRSLIEQNKSVIAPLVSRNANLWSNFWGALNSD
GYYARSEDYIDVVQRQRNGVWNVPYISSVYLVKGSILRSKLNQNDLFHSGTLDSDMAFCH
NVRQQGVFMFVTNRQEFGHILSLKNYKTTHLHNDLWEIFENTEDWKEKYIHHNHSEALKG
KLVEMPCPDVYWFPVFTETTCNEIVEEMESFGKWSTGSNTDQRLQGGYENVPTIDIHMNQ
IGYEKEWQKILLDFIAPLTQKMFPGYYTMAQFDLAFVVRYKPDEQPLLEPHHDASTFTVN
IALNSVGQDYEGGGCRFLRYNCSVRALRKGWALMHPGRLTHYHEGLRVTKGTRYIVVSFV
DP
NT seq 2169 nt   +upstreamnt  +downstreamnt
atgggagtgatgctattgcctcttctcctgtgggtcctggtcatcctgccccgctggggg
aactgcgctaacccagatgatgataatcttttggtcctaaccgttgccactgaggagaca
gaaggcttaaggcgtttccaaagatctgcgcactcctttaactacaaagtgaaggttctg
ggactaggagaagaatggcttggagatggacaaaagatccagctcatgaagttggctctg
gagccatattcagacaaagaggatctaattatcttattcactgaaagttatgatgtgatt
tttgcatctggacacggagaactcttgaaaaaattcagacaagccaagagtaaggttgtt
ttctcagcagaatctgtagcttaccctgaccgacatttagagtcaaagtatcctgtggtt
cgagagggtaaacggtaccttggatctggagcatttataggttatgctgcacatctgtat
aagatggtagcggactgggatggaacagataagagcagtgaccagctcttttatacaaag
ctcttcctagatcctgttaaaaggggaaagattaatataaccctagatcacagatgtcgg
attttccagaatctctatggatctgcagaggatgttgtcctgaagtttgagtatggtcgt
gtaagagctagaaaccttgtatatgatactcttcctgtcttaattcatggaaatggccca
acaaagcttcatctgaactatctcagtaattacattccccgagtatggacttttgagtcg
ggttgcaatgtctgtgatgagggtctgaggaatttggatggtctaacggttgatactctt
ccattggtagtaattggcatttacattgaacaaccaacaccatttgtctctgagtttttt
aagcgtctgaataatttaaattatcccaaaaaccgaatccagctttatatcagcaatcat
gaacctcatcaccagaaacgggtagaacattttctgcaggaccatggtacacaatacaac
tttgttaaaactgtggggccagaggaaaactcagactttgctgatgcccgtaataaagga
atggatatgtgccggcaaactccagagtgtgaatattacttcagtattgatgccccggta
gtgctgaaaaacaccaatgttcttcggagcctcatagaacaaaacaagtctgtaattgcc
ccattggtgagccgaaatgcaaacttgtggtcaaacttttggggagccttaaattccgat
ggatattatgctcgatctgaggattacatagacgttgttcagagacaaagaaatggcgtc
tggaatgtcccttatatctccagtgtttatttggtgaaaggaagcattctaaggtctaaa
ctaaatcagaatgacctgttccacagtggtaccttggactctgacatggcgttctgtcat
aatgtccgccaacagggagtctttatgtttgttacaaacagacaggaatttggccacatc
ctttccctgaagaattacaaaacaactcatctacataatgatctttgggagatttttgaa
aatacagaggactggaaagaaaaatatattcatcataatcattcagaagcattaaaagga
aaattagttgaaatgccctgcccagatgtgtactggtttccagtatttacagagacaacc
tgcaatgagatagtagaagaaatggagagctttggcaagtggtcaactggtagtaacacg
gatcaaaggctccaaggtggctatgaaaatgtccctacaatagacattcacatgaaccag
attggctatgaaaaagaatggcaaaagatactactagattttattgcgccattaactcag
aaaatgtttccaggttactataccatggcacagtttgacttggcttttgttgtgcgatac
aaaccagatgaacaaccattacttgagcctcatcatgatgcctccacctttactgttaac
attgctctaaacagtgtaggacaagattatgagggaggtggctgcagattcctccgatac
aattgctctgtaagagccctaaggaaaggctgggctttgatgcacccaggacgactgact
cactaccatgagggactgcgtgtaactaaaggaacaagatacattgtggtttcttttgtg
gatccttaa

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