Xenopus laevis (African clawed frog): 398438
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Entry
398438 CDS
T01010
Symbol
smn1.L, bcd541, c-bcd541, gemin-1, smn, smn2, smn2.L, smnc
Name
(RefSeq) survival of motor neuron 1 L homeolog
KO
K13129
survival motor neuron protein
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
398438 (smn1.L)
Spliceosome [BR:
xla03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
398438 (smn1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMN_YG-box
SMN_Tudor
SMN_G2-BD
TUDOR
Motif
Other DBs
NCBI-GeneID:
398438
NCBI-ProteinID:
NP_001082386
Xenbase:
XB-GENE-865839
UniProt:
Q6NU78
A0A974E469
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All DBs
Position
1L:complement(198683695..198698260)
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AA seq
282 aa
AA seq
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MAGLEDGGEVLFRRGAGQSDDSDIWDDTALIKAYDKAVSSFKRALKNEDCTIGAETEEKN
PRTKRKNNKKNRSRKKCNAAPLKKWRIGDTCNAVWSEDGNIYSATISSIDAKRGTCIVVY
SGYGNSEEHSLADLRFPDTSEAESDQRDQEQEINGDEHSTDESDRSSRSHQSKDPQNRET
PKSSQWNGQFPPVPPPFMPGFGRHGEKLDQAHPFLSGWPPPFLPGPPMIPPPPPMSPDAC
EDDEALGSMLISWYMSGYHTGYYLGLKQGRMESSIGKPPHQK
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtttggaggacggtggggaagtgcttttcagacgtggagcgggacagagtgat
gactctgatatctgggatgacacggctctaattaaagcatatgataaagcagtgtcttct
tttaagagagctctgaagaatgaggattgtacaattggtgcagaaacagaagaaaaaaat
cccaggaccaaaaggaaaaataataagaagaatagaagcaggaagaagtgtaatgctgcg
ccgctgaaaaagtggagaataggagacacgtgtaatgccgtttggtcagaagatgggaat
atttactcagctaccatctcttccattgatgctaaaagagggacttgcatagttgtttat
agcggatatggcaatagtgaggaacacagcttggctgacctgcgttttccagatacttct
gaagcagaaagtgaccaaagggaccaagagcaggagataaatggagatgagcattcaaca
gatgaaagtgatagatcttcaagatcgcatcaaagcaaagatcctcagaaccgggagacg
ccaaagtcctcacagtggaatggccagttccctcctgttccccctccatttatgcctggc
tttggaaggcatggtgagaagctggatcaagcacatccctttctctctggatggccccca
ccatttctacctggaccacctatgattccaccccctccaccaatgagccccgatgcttgt
gaagatgacgaggcattgggcagtatgttgatctcctggtacatgagcggatatcacact
ggctactacctgggactaaagcaagggcgaatggaatcttccattggaaaaccacctcac
cagaagtaa
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