Xenopus laevis (African clawed frog): 398492
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Entry
398492 CDS
T01010
Symbol
smc5.S, SMC-5, smc5
Name
(RefSeq) structural maintenance of chromosomes protein 5
KO
K22803
structural maintenance of chromosomes protein 5
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xla03400
]
398492 (smc5.S)
DNA repair and recombination proteins [BR:
xla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
398492 (smc5.S)
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
AAA_15
AAA_21
CEP135_TSGA10_CC
AAA_23
AAA_29
IFT20
AAA_25
AAA_13
CCDC39
APG6_N
Motif
Other DBs
NCBI-GeneID:
398492
NCBI-ProteinID:
NP_001082472
Xenbase:
XB-GENE-953075
UniProt:
Q805A1
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All DBs
Position
1S:119777130..119813444
Genome browser
AA seq
1065 aa
AA seq
DB search
MESAPVKRKAXGTKLLLGRQEHHRNLVEGSIVRIKMENFLTYDQCEVFPGPYLNMIVGAN
GTGKSSIVCAICLGLAGKTAFIGRADKVGFYVKRGCQKGFVELELYKTSGNVIIKREIQV
ANNQSVWYINHKSATLKTVEEQVPALNIQVGNLCPIPATRTKFGEFANLSKIETSKKQLK
NHVGTPRNVQVPLRIEELHGEKKELAGACKSKAEFLEKLNQRNERYKQDVERYYQQKRHQ
DKIDMLERKRPWVEYENVRQQYEDVKKSCGNFKDELKKLQGLQAPLNQKIQQIEKRQRII
DEKIKDKAIEIKETSKNCKQKQDELEQKDKQIEEVQQSLRVKRDAEQERQKKIGNIRKMI
EDWEKELSAMTNQENIQPEMDSINTDFRRIQDDKANIESEMTDLRMEKDNLEREKKEKAN
RIKQFDNLMNLKEEKLKRMYSDTYNAVVWLKENKDRFKNRVCQPMMLEINMKDQRHAKYV
ENHIPMNDMKAFVFESQEDMQVFLKEVRDKQNLRVNTVCAPQEPYAEQRPKRPITDLKQY
GFFSYLRELFDAPYPVMNYLCYQYKVHEVPVGTEQTRSMIEKVIKETDLRQMYTAEEKYV
TKKSVYSQKLISSNVSLKGAQFLTVTVDAEERQQVVDQLKEIERKCSTIETSMEQLAERQ
RSLDRRDNELRLRKKTILEMKTKKRQLEQKISTKYDSLNRLEQDNLNLEEVQQQANNRIK
NLNVQKAKLVKDLLELMKECTSLSIEKVELALQSTAISSEKNKIESDYKSATSQLRELKN
QYDGIEAKKLHLLENCKGLLRKARQACNLGPNQAVPQDFQTAFQSLPESLDEIDAMLNEE
RSRASCFTGLTASVVDDYNKRTKEIQEVTEELNRKKLELEDYRKNISQVKEKWLNPLKQL
IEKINDQFSSFFSSMQCVGEVDLHTEKEEEYDKYGIRIRVKFRSSTQLHELTPHHQSGGE
RSVSTMLYLMALQELNRCPFRVVDEINQGMDPVNERRVFEMVVKTACKENTSQYFFITPK
LLQNLTYAEKMTVLFVYNGPFMLEPTKWNLKAFHRRRRRVAAVDQ
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atggagtctgcaccggtgaagaggaaagctgntggcacgaagttgcttttaggtcgacaa
gaacatcatcggaaccttgtggaaggaagcatcgtgaggatcaagatggagaactttctg
acatatgaccagtgtgaggtgtttccaggcccatacttaaatatgattgttggtgctaat
ggaacgggaaagtctagtattgtttgtgccatatgtcttggattagctggcaaaacagca
ttcattggtcgtgcagataaggttggattttatgtgaagcggggctgccaaaaaggattt
gttgaactagaactgtacaaaacatctggaaatgtgatcatcaaaagggagattcaagtt
gcaaacaaccagtctgtgtggtatataaaccataaaagtgcaacactgaaaactgttgag
gagcaggtacccgctctaaacatccaagttggaaacctttgtccaattcctgccacaagg
acaaagtttggggaatttgctaacttgtctaaaattgaaacttctaagaagcaactgaaa
aatcacgttggcactcccagaaatgtacaagttccactgcgaattgaagaactgcacgga
gaaaaaaaggaacttgcgggtgcttgcaaaagtaaagctgagtttttggaaaaattgaac
caaagaaacgaacggtacaaacaagatgttgagaggtactaccagcaaaagcgccaccaa
gataaaattgacatgttggaaaggaagagaccctgggtggaatatgaaaatgtgcgtcag
cagtatgaagatgtaaaaaaaagttgtggtaatttcaaggatgagctaaagaagttacaa
ggattacaagctccactcaatcaaaaaatccagcaaattgaaaagaggcagagaatcatt
gatgaaaagattaaagataaagcaattgagataaaagaaacctctaagaattgtaagcag
aaacaggatgagctggaacaaaaagataagcagattgaggaagtccagcagtcactaaga
gtgaaaagagatgcggagcaggagagacaaaagaagattggcaacatacgtaaaatgatc
gaagattgggagaaagagctcagtgctatgacaaaccaagaaaacattcagccagaaatg
gattctattaacaccgactttcgacgcatccaggatgataaagcaaatattgaaagtgaa
atgactgacctgagaatggagaaggataatctggagagagaaaaaaaagaaaaggctaat
agaattaagcagtttgacaatttaatgaatctcaaagaagaaaaactgaagagaatgtat
tctgatacttataatgctgttgtgtggttaaaagaaaataaagatcgatttaagaaccgt
gtttgccaaccaatgatgctggaaattaacatgaaagaccaacgccatgcaaaatatgtt
gaaaatcatattcccatgaatgatatgaaggcttttgtttttgaaagccaagaagatatg
caagtgtttctaaaagaagtgcgtgataagcaaaatctgagagtaaacactgtatgtgcg
ccccaagaaccatatgcagagcaaaggcctaaaagacctatcactgatcttaagcagtat
ggatttttttcttaccttagggaattatttgatgctccttatccagtgatgaattactta
tgctaccagtataaagtgcatgaggtacctgttggaacagagcaaactagatctatgatt
gaaaaagtaattaaagaaactgaccttcgacaaatgtacacagcagaggaaaagtatgtc
acaaaaaaatctgtttatagccagaaacttatttcaagtaatgtgtccttaaaaggggct
cagttcttaactgtcaccgttgatgcagaagaaaggcagcaggtggtagatcagctaaag
gagattgaaagaaaatgttccactatagaaacttcaatggagcagttggctgagagacaa
aggtctttggaccgaagagataatgaattgagattgaggaagaaaacaattttggaaatg
aaaaccaaaaaaagacaactggaacaaaaaatttctacaaaatatgacagcttgaatcga
ttggaacaagataacttaaatttagaggaagttcaacaacaagctaataacaggataaaa
aatctcaatgtacagaaagcaaagcttgtaaaagatcttctggagttaatgaaggaatgt
acatcactaagtatagaaaaagtggagttggccctccaaagcactgctatatcatctgag
aagaacaaaattgagtctgattacaagagtgccacatcacagttaagggaattaaagaac
caatatgacggtattgaggccaagaagcttcatttacttgaaaactgtaaaggactcttg
agaaaagcaaggcaggcttgtaacctaggaccaaatcaagctgtgcctcaagattttcag
actgccttccaatcgctccccgagtcattggacgagatagatgctatgctaaatgaagaa
agatctagagcatcatgcttcacaggcttaactgcttcagttgtagatgattacaacaaa
cgaacaaaagaaatccaagaagtgactgaggaacttaacagaaaaaaactcgagctggag
gattacaggaagaacatttcacaggtgaaggaaaagtggctcaaccctttaaaacaacta
atagaaaaaattaatgaccaattcagcagtttctttagttcaatgcaatgtgttggtgag
gtggatctccacacagaaaaagaggaagagtacgataagtatggaatccgaattcgtgtg
aagttccgaagtagcacacagctgcatgaactgactccacatcatcagagtggaggagaa
cgtagtgtttctacaatgctttatcttatggctcttcaggagcttaacagatgccctttc
agggttgtagatgaaataaatcagggaatggacccagtaaatgaaagacgagtttttgaa
atggttgttaagacagcttgcaaagaaaacacttctcagtatttcttcattacaccaaag
ctgctccagaatcttacctatgcagaaaaaatgactgtgttgtttgtttacaatggccca
ttcatgctggaacccacaaaatggaatttgaaagcattccatagaagacgaagaagagtt
gcagctgtggatcaataa
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