Xenopus laevis (African clawed frog): 398560
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Entry
398560 CDS
T01010
Symbol
col9a1-b
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04510
Focal adhesion
xla04512
ECM-receptor interaction
xla04518
Integrin signaling
xla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
398560 (col9a1-b)
04518 Integrin signaling
398560 (col9a1-b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
398560 (col9a1-b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
398560 (col9a1-b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xla00535
]
398560 (col9a1-b)
Proteoglycans [BR:
xla00535
]
Extracellular matrix (ECM) proteoglycans
Others
398560 (col9a1-b)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
398560
NCBI-ProteinID:
XP_041420628
UniProt:
A0A8J1KV36
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Position
5S:79533431..79616776
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AA seq
786 aa
AA seq
DB search
MENNRLRSISMAQKRLWNLYTRQQMGKPILLPFPIFPSYLTINFTKFCLFSVEKTKLTLY
IDCIKVDTFTLVPQGKITADGYTILGKLKNNHEIAVPFDLQWILIHCDPLKPQRESCTEL
EARREVEMALLERGPPGPPGPMGPPGPSGVPGIDGIDGDRGPGGPPGPPGLDGDPGKSGS
PGIPGEPGADGLTGPIGSPGKVGPRGQKGEPGLPGSRGLQGTGVPGPRGGPGAPGLLGEL
GRGGPMGDVGARGVPGPPGPPGPRGPTAQGEPLCPNACPPGKPGYPGLPGMKGHKGVKGE
AGEPGKQGHKGEEGEQGGVGEIGSQGPPGPQGLRGITGIMGAKGSKGARGTDGEPGPRGV
AGATGDQGQRGGLGETGPKGERGPVGPRGITGMPGSKGESGLPGVDGRDGIPGLPGAKGE
FGEPGAPGEVGLQGLPGMPGNPGAKGTAGEKGNSGASGVPGLMGNSGKPGDQGPQGEVGP
RGPVGSPGERGEAGPVGPTGPLGKQGPQGDPGFIGLPGPPGLPGLKGDRGTVGETGPKGE
QGGAGEEGFSGEKGELGDVGKSGAKGASGSPGESGNRGPEGSRGLPGVEGSQGSPGPRGM
QGEQGAPGLPGSQGPSGREPTDPHIKQVCMRVLQEQLAQLAASLRRPESGAAGLPGRPGP
PGPPGQPGDNGVPGHSGLRGLPGLKGPSGEIGLKGPKGDAGERGERGLPGRGSKGIPGLP
GLPGEPGKPSYGREGRDGERGPPGPAGSPGIPGPPGSSGPAGYCDPSSCSLQAIAAPQSG
KDMKGP
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacaacaggctgcgatcaatttcaatggcccaaaaaaggctctggaatttgtat
acaaggcaacagatgggaaaacccatactgttacctttcccaatcttcccttcctattta
acaataaatttcacaaagttttgtcttttcagcgtggaaaagacaaaactcaccctgtat
attgactgtattaaagttgatacgttcactttggtgccacaaggaaaaatcacagcagat
ggttatacaatcctggggaagctaaagaacaaccatgagatagctgtgccgtttgatcta
cagtggattttgattcattgtgatcctttgaaacctcaaagagaatcctgcactgagctg
gaggccaggagagaggtcgagatggccttgctagagagaggaccacccggcccccctggg
cctatgggaccccctgggccttcaggagttcctggcattgacggtattgatggagacagg
ggtccaggcggtcctccgggcccaccgggtctggatggcgacccaggcaaatctggatca
ccgggaatacctggcgagcccggggctgatgggctgacaggacctataggatctcctggc
aaagttggaccaagagggcagaaaggtgaacccggactgccaggttctcgaggattacaa
ggcactggtgttcctggaccaagggggggtccaggtgcccctggacttcttggagagtta
ggacgcggtggaccaatgggtgatgttggtgcaagaggtgttccagggccaccaggacca
ccaggtccacgaggcccaactgcacaaggagaacccctgtgccccaatgcttgcccacca
ggaaaaccaggatatccaggcttgccaggcatgaagggccacaagggtgtaaaaggagaa
gctggtgagccaggaaaacaaggccataagggagaagaaggtgaacaaggaggagttggg
gaaattggttctcagggacctccgggtccgcaaggtttgagaggtatcactggtataatg
ggagccaaaggcagcaagggtgcccgtggaactgatggagagcctggtcctcggggagtg
gctggtgcaactggtgatcaaggtcaacgcgggggtttgggagaaacaggaccaaaaggg
gaacgggggcctgttggaccaaggggcataactggaatgccaggatctaaaggagagtcg
gggttgcctggtgttgatggtcgtgatggaattccaggattgccgggtgcaaagggtgaa
tttggagaaccaggggctcccggagaagttgggcttcagggattgccaggtatgccaggc
aatcctggtgccaagggaacagctggagagaagggtaacagtggagcttcaggtgtacct
ggcctaatgggaaactctggtaaacctggtgatcaaggaccacaaggcgaagttggccca
agaggacctgttggttcaccgggtgaaagaggagaagcagggcccgttggtcccactgga
ccacttggaaaacaaggtcctcaaggagatcctgggtttattggcctgcctggtcctcct
ggacttccgggactcaaaggtgacaggggtacagttggtgagactggacctaaaggtgag
cagggtggtgctggagaagaagggttttcaggagaaaagggagagctgggtgatgttgga
aagtctggtgcaaaaggagcttctggaagcccaggggagtcaggtaatcgtggcccagaa
ggaagccgtggactgcctggagtagaaggttcccagggatcacctggtcctcggggtatg
cagggggagcaaggtgcacctggattacctggaagccaaggaccttctggtagagagcca
actgatccacacattaagcaagtctgcatgagggttcttcaagaacaattggcccagttg
gcagccagtctgcgtcggcctgaatctggggctgcaggacttcctgggcgaccaggtcca
cctggacctccagggcaaccaggagataatggcgtacctgggcattctggccttagagga
ctaccagggcttaaaggaccttctggtgagattggtcttaaaggtccaaaaggtgatgca
ggagaaagaggtgaaagaggattaccgggaagaggttcaaagggaattcctggtctgcca
ggtcttccaggtgaaccagggaagccaagctatggtcgagagggacgtgatggagagaga
ggcccacctggtcctgctggttcgccaggaatacctggaccgcctggctcttctggccca
gcaggatattgtgatccatcctcttgcagccttcaagctattgctgctcctcagtctggt
aaagacatgaaagggccttga
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