Xenopus laevis (African clawed frog): 398680
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Entry
398680 CDS
T01010
Symbol
rlim.S, rlim, rlim-a, rlim-b, rlim.L, rnf12, rnf12-A, rnf12b, xrnf12
Name
(RefSeq) E3 ubiquitin-protein ligase RNF12-A
KO
K16271
E3 ubiquitin-protein ligase RLIM [EC:
2.3.2.27
]
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xla04121
]
398680 (rlim.S)
Enzymes [BR:
xla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
398680 (rlim.S)
Ubiquitin system [BR:
xla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
398680 (rlim.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
zf-RING_UBOX
Prok-RING_4
zf-RING_16
zf-RING-like
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
398680
NCBI-ProteinID:
NP_001082725
Xenbase:
XB-GENE-866117
UniProt:
Q641J8
A0A9U5B630
A0A974C3D6
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All DBs
Position
8S:55299671..55321548
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AA seq
622 aa
AA seq
DB search
MESADSTGKGSIEQSESQRQSQMDRLDREEAFYQFVNNLNEDDYRLMRDNNLLGTPGEIT
KEELLRRLQQIKEGPPQPSTEETRGDSVSTGGDPAEDSSNGDSIIDWLNSVRQTGNTTRS
GQRGNQSWRAVSRTNPNSGDFRFSLEINVNRTSGNPSMPSLDQSAEMPGAEDMEVSSQGE
AENEPEPIPIATRSAPAEVTVEEAPIQRGQRRARSRSPDQRRTRARTDRSRSPLHHAVDP
PIRRAPHSSSQTVDTSNTEEAEGSSRTRHHVSSQVQNSSSSNETEGSSRTRQHIPARQQV
LGTEGQSQSTVHLSNPETRSSSQTPQTDSSTNAETTGTGQRPPTIVLDLQVRRVRPGDYR
QRDSIANRTRSRSQTPNNTVTYESERGGFRRTFSRSERAGVRTYVSTIRIPIRRILNTGL
SETTSVAIQTMLRQIMTGFGELSYFMYNDNDTDPNNPTAVSPTAAVPGEAQNNANAEVRA
PSAEPTEPVAPVETDEGSNVSTTATRREGRNSRGAVTFEESGSLPFLSLAQFFLLNEDDD
DQPRGLTKEQIDNLSTRNFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLS
ENSTCPICRRAVLVASNRESIV
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggagagtgctgattccacgggaaaagggagcattgaacagtccgaatctcagcgccaa
agccagatggacaggctagatcgagaagaagctttttatcagtttgtaaataacttaaat
gaggatgactaccgccttatgagagataacaatttattgggtactccaggggaaattact
aaagaggaattgttgcgaagacttcagcaaatcaaagaaggtcctccacagccaagtaca
gaagaaacaagaggcgattctgtctctacaggtggggaccctgcagaggattcctccaat
ggagattctataatagattggctgaattcagtgcggcagaccgggaatacaacacgaagt
ggtcagagaggcaaccagtcctggagggcagtgagcaggacaaatccaaacagtggtgat
ttcaggtttagtttggaaatcaatgtgaatcgtacttctggcaacccaagtatgccttcg
cttgaccaatcggctgagatgcctggggctgaggatatggaagtgagcagtcagggtgag
gctgagaatgaacctgaacctataccgattgccacaaggtcagcaccagcagaggtgact
gtagaggaagcaccaatacagagggggcaaaggagggcccgaagcagaagtccagatcag
cgcagaactcgagctagaactgatagaagcagatcccctctgcatcacgctgttgaccca
cctattcgaagggctccgcattcttcatcacagactgttgatacttccaatacggaagaa
gcagagggtagctctaggactaggcaccatgttagttctcaagtgcagaacagctcttca
tcaaatgaaacagagggtagctctagaactagacagcatattccagctagacaacaagtt
cttgggactgaaggtcagagccaaagcactgttcatctgtcaaacccagagaccagaagc
tcttcccaaacacctcaaacagactcctccactaatgcagagactacaggtaccggacag
aggcctcccaccattgtcctagatctgcaggtaaggcgcgtgcgcccaggtgactacagg
cagagagacagcatagctaacaggacacgttcacgctctcagactcccaacaacacagtc
acatatgagagcgaaagaggagggtttcgccgcactttctcacggtctgaacgtgctgga
gttagaacatatgtaagtaccatccgtattccaattagaagaatcctgaacactgggctc
agtgaaaccacatctgtggccatccagacgatgctgaggcaaataatgactggctttggt
gagctcagctacttcatgtacaatgataatgatactgatcctaacaaccccacagcagta
tctcctactgcagcagttcctggtgaagcacaaaacaatgcaaacgcagaggtcagagct
cctagtgctgagcctacagaacctgttgctccagtggaaactgatgaaggcagcaatgtt
tcaactactgctaccaggagggagggccgcaatagcagaggggctgtcacatttgaagaa
agtggatccctaccttttcttagtctggcccagttcttcctgcttaatgaggatgatgat
gatcagccaagaggactcaccaaagagcaaatcgataacctgtccacgcggaactttggt
gaaaatgatgccctgaaaacatgtagcgtgtgcataacagaatatacagaagggaacaag
ctgcgcaaactgccttgttctcatgagtaccacatccattgtatcgaccgctggttgtct
gaaaattctacctgtcccatctgtcgcagagcggtcctggttgcaagcaacagagagagc
attgtgtaa
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