Xenopus laevis (African clawed frog): 398890
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Entry
398890 CDS
T01010
Symbol
polr2b.S, polr2b
Name
(RefSeq) polymerase (RNA) II (DNA directed) polypeptide B, 140kDa S homeolog
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03020
RNA polymerase
xla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
398890 (polr2b.S)
09124 Replication and repair
03420 Nucleotide excision repair
398890 (polr2b.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
398890 (polr2b.S)
03400 DNA repair and recombination proteins [BR:
xla03400
]
398890 (polr2b.S)
Enzymes [BR:
xla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
398890 (polr2b.S)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
398890 (polr2b.S)
DNA repair and recombination proteins [BR:
xla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
398890 (polr2b.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_1
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
398890
NCBI-ProteinID:
NP_001083372
Xenbase:
XB-GENE-1012879
UniProt:
Q6PA46
LinkDB
All DBs
Position
1S:81637207..81748656
Genome browser
AA seq
949 aa
AA seq
DB search
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTTGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVVKEGEEQIQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSSIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVSFTSIVYFGKYSNLNECSVSMIQRHL
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatgcagatgaagatatgcaatatgatgaagatgatgatgaaatcactccagat
ctgtggcaggaggcatgttggattgttattagctcttattttgatgaaaaaggtttagta
cggcaacagcttgattcctttgatgagtttatacagatgtccgtacagaggattgtcgaa
gatgccccacctatagaccttcaagctgaagctcaacatacgacaggagaagtagaagag
cctcctaggtacctgttaaaatttgaacagatttatttatctaagcctacacattgggaa
agagatggtgcaccctcaccaatgatgccaaatgaagcaaggttaagaaatctaacatat
tctgcccctctttatgtggacataactaagaccgtggttaaagaaggagaggaacaaatt
caaacacaacatcagaaaacatttattggcaaaataccaattatgttacgatcaacatac
tgtttgttgaatggactgactgaccgtgatctttgtgagttaaatgaatgcccacttgat
ccaggcggctactttattataaatggatctgaaaaggttcttattgctcaagaaaagatg
gctacaaacacagtatatgtgtttgcaaagaaagattcaaagtatgcttacactgctgag
tgtaggtcctgtctggaaaattcgtcaagaccaactagttctatatgggttagcatgctt
gcaagaggaggtcagggtgccaaaaaaagtgccataggtcaacgcattgttgcaacccta
ccttatatcaagcaggaagttcccattattattgtcttccgtgctttaggatttgtgtct
gacagggacatattagaacatattatttatgactttgaagatccagagatgatggaaatg
gtcaaaccatctcttgatgaagcctttgttatacaagaacaaaatgtggctctgaatttt
attggttctagaggtgccaagcctggtgttacaaaagaaaaaagaatcaaatatgcaaaa
gaagttctacagaaggaaatgcttccacatgtcggcgtcagtgacttctgtgaaacaaaa
aaagcatactttctaggatacatggttcacagactacttctggctgcactaggaagaagg
gaactggatgatagagatcactatggtaacaaaagattggatctggctgggccgttgctt
gcttttctttttcgagggatgttcaagaatttgctgaaagaagttcggatatatgcacag
aaatttattgaccgaggaaaagattttaatctagaactagcaattaaaactaggataatt
tctgatggattgaagtattctttagccactggaaactggggtgaccaaaagaaagcacat
caagcaagagctggtgtatcacaggtgttaaatcgccttacctttgcatcaactctttct
catttacggagattaaattctcctattgggagggatggaaaacttgcaaaaccacgacaa
ttgcacaacactctgtggggaatgatttgtcctgctgagactccagagggccatgctgta
ggacttgtaaagaatttggcattgatggcctacatttctgttgggtctcagccatcacct
atactagagtttttagaagaatggagtatggaaaaccttgaagaaatttctccagcagcc
attgcagatgccactaaaatctttgtgaatggttgctgggtcggaattcacaaagatcca
gaacagctgatgaacacacttcggaagctacgccgccaaatggatataattgtttctgag
gtgtcaatgattcgagatatccgagaaagggaaatccgtatttatactgatgctggtcga
atctgcaggccactgttaattgtggaaaagcaaaagcttcttctaaaacggagacatatt
gatcagctcaaagagagagaatacaataattacagttggcaggatcttgtagctagtggt
gttgtggaatatattgatacactagaggaagagactgtcatgcttgctatgacgccagat
gacttgcaggaaaagggggtcgcttattgttcaacatatacgcactgtgaaattcatccc
tcaatgatcctaggagtctgtgcttctattattccattccctgatcataaccagtctcct
agaaacacatatcaatctgccatgggtaagcaggcaatgggtgtctatattacaaatttt
catgttcgtatggataccttggcacacgttttatattacccccagaaacctctggtaact
acaaggtccatggagtacctgagattcagagaacttccagcaggtatcaactccattgta
gctattgcttcttatactggatataatcaagaagactctgttattatgaatcgctctgct
gttgacagaggatttttcaggtctgttttctaccgttcgtacaaagaacaagagtccaaa
aagggatttgatcaagaagaggtttttgagaaaccaactcgtgaaacgtgccagggaatg
aggcatgctatctatgataaacttgatgatgatggcttgatagcacctggtgtacgtgtg
tcgggggatgatgtaatcattggcaagacagtaactctgcctgaaaatgaagatgagtta
gaaagtactaaccgccgttacaccaagagagactgtagtacttttctgcgtaccagtgaa
actggaattgttgatcaggttatggtgacacttaatcaagaggggtacaagttttgtaaa
ataagggtaagttttacaagtattgtatattttggaaaatattcaaatctgaatgaatgc
agtgtcagcatgatccagaggcacctataa
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