Xenopus laevis (African clawed frog): 399026
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Entry
399026 CDS
T01010
Symbol
ddb1.S, ddb1, ddba, uv-ddb1, xap1, xpce, xpe, xpe-bf
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03420
Nucleotide excision repair
xla04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
399026 (ddb1.S)
09124 Replication and repair
03420 Nucleotide excision repair
399026 (ddb1.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xla04121
]
399026 (ddb1.S)
03400 DNA repair and recombination proteins [BR:
xla03400
]
399026 (ddb1.S)
Ubiquitin system [BR:
xla04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
399026 (ddb1.S)
DNA repair and recombination proteins [BR:
xla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
399026 (ddb1.S)
TCR (transcription coupled repair) factors
Cul4-CSA complex
399026 (ddb1.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
399026
NCBI-ProteinID:
NP_001083624
Xenbase:
XB-GENE-967911
UniProt:
Q6P6Z0
A0A974HL81
LinkDB
All DBs
Position
4S:complement(6175137..6199778)
Genome browser
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACVTGHFTSEDDLNLLIAKNTRLEIYVVTPEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGDSIDIITRAHGNVQDRIGRPSETGI
IGIIDPDCRMIGLRLYDGLFKVIPLERDNKELKAFNIRLEELHVIDVKFLYSCQAPTICF
VYQDPQGRHVKTYEVSLREKEFSKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDVNGSRYLLGDMEGRLFMLLLEKEEQMDGSVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLTTESNEQGSYVVVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRVAADRD
TDDTLVLSFVGQTRVLTLTGEEVEETDLAGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QNPQNLVSEWKEPQGRKVSVCSCNSRQVLLAVGRVLYYLEIHPGELRQTSCTEMEHEVAC
LDVTPLGGNDTLSSLCAIGLWTDISARILSLPGFQLLHKEMLGGEIIPRSILMTSFESSH
YLLCALGDGALFYFSLNTDTGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLFES
PRKICYQEVSQCFGVLSSRIEVQDASGGSSPLRPSASTQALSSSVSCSKLFSGSTSPHET
SFGEEVEVHNLLIIDQHTFEVLHTHQFLQNEYTLSLVSCKLGKDPTTYFVVGTAMVYPDE
AEPKQGRIVVFQYNDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
SPPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDVQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVIANLQIDDGSGMKRETTVDDLIKVVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaactatgtggtgacggctcagaaacccacagcggtcaatgcctgtgtgaca
gggcactttacatctgaggatgacctgaatctgctgatcgctaaaaacacccggctagag
atttatgtggtgacaccagaagggctgaggcctgtcaaggaggttggaatgtatggcaaa
atcgcagtgatggagctcttcaggcctaagggtgaaagtaaagacttgctgtttatactg
acggctaaatacaatgcttgtattctggagtacaaacagagcggggacagcattgatatc
ataactcgtgcacatggcaatgtacaggatcgcattggccgtccttctgaaactggaatt
attgggatcattgacccagactgcagaatgattggtcttcgtctttatgatgggctattt
aaagtcataccattagagcgggacaataaagagctaaaggcctttaacattcgcttggag
gagttgcatgtcatcgatgttaagttcctatatagttgccaggcccccactatatgcttt
gtgtatcaggacccccaaggcagacatgtcaagacatatgaggtttctctgagggagaag
gagttcagcaaggggccctggaaacaggaaaatgtagaggcagaagcctctatggtcatt
gcagttccagagcctttcggaggtgcaattatcattggccaggagtccattacctaccac
aatggagacaaatacctggcaatagctcctccaatcatcaagcaaagcactatcgtgtgc
cataacagagtagatgtcaatggttcacgttatctgctgggtgacatggagggccgtctg
tttatgcttttgttggagaaagaagagcagatggatggaagtgtcacactgaaggatctg
cgtgtggaattactaggagagacttccattgctgaatgtctgacttatttggacaatgga
gttgtgtttgtgggttcccgccttggagattcccagctagtgaagcttacgacagagagc
aatgaacagggatcatatgttgttgtcatggagactttcacaaacttgggccccattgta
gacatgtgtgttgtggatctggagaggcaaggacagggacagttagtgacctgctctgga
gcctttaaggagggctctttgagaattatccgaaacggaattgggatccacgaacatgcc
agtattgatcttcctgggataaaaggtctttggcctctcagagttgctgctgatcgtgac
acagatgacactctagttttgtcttttgtgggacagacaagagtcctaacgcttacagga
gaagaggtcgaggaaacggacttggctggctttgttgatgatcaacaaacttttttctgt
gggaatgttgcacatcagcagcttattcagatcacatcagcctcagtacggctggtatct
caaaacccacaaaacttggtgagtgaatggaaagaaccacagggtcggaaggttagcgtc
tgctcctgcaatagtcgccaggtgctgctcgctgtgggtagagttttgtattacttggag
atccaccccggggaactgcgtcagaccagctgcacagaaatggagcatgaggtggcctgt
ctagatgtcacacctcttggaggaaacgatactctttcctctctttgtgccatagggcta
tggacagatatctctgcacgtatcctgagccttccaggcttccagcttttgcacaaggag
atgctgggtggagaaataatcccacgttccatcctcatgacttcattcgaaagcagtcac
tacttgctttgtgcacttggagatggtgcccttttctacttcagtctaaacacagacaca
ggccttctgagcgataggaaaaaggttactctggggacccagcccacggtactcaggact
ttccgatctctgtcgacgactaatgtgtttgcctgctccgatcgtcctaccgtcatctac
agcagcaaccacaagctggtcttctcgaatgtcaacttaaaggaggtcaactatatgtgc
cccctgaactctgagggataccctgacagcttggccttagccaataatagcaccctgact
attggaaccatcgatgaaatacagaagctacatatccgcacagtgcccttgtttgagtct
cccagaaagatatgctatcaggaagtctcgcagtgctttggggttctttccagccgtatt
gaggtgcaggatgccagtgggggtagctccccactcagacctagtgcaagcacacaggcg
ctctctagcagtgtgagctgcagtaaattgttttctggaagtacatctccacatgaaact
tcttttggggaagaggttgaagttcacaatttattaatcattgatcagcacacatttgaa
gtgctgcacacacatcaattcctgcaaaatgagtatacccttagcttggtctcctgtaaa
ctggggaaggatccaaccacttactttgtagtagggactgccatggtgtatccagatgaa
gctgaaccaaagcagggaaggatcgtcgttttccagtataatgacggaaaactgcaaacc
gttgcagaaaaggaggtgaaaggagctgtttactctatggtggaatttaatggaaagctg
ctagcaagtatcaacagcacggtacgactctacgagtggactgctgaaaaggaattgcga
acagagtgcaaccactacaacaatatcatggctctctatctgaaaacaaagggtgatttt
atcctggtgggagacttgatgcgctcagtgctgctgttggcttataaaccgatggaagga
aactttgaggagattgcacgagatttcaatcctaactggatgagcgccgtggagatttta
gatgacgacaatttcctgggagccgagaatgctttcaatttatttgtgtgtcagaaagac
agtgctgctactactgatgaggagcggcagcatttacaagaagtcggtctctttcatctg
ggtgaatttgttaatgtcttctgtcatggctccctggtaatgcagaatctgggtgagacc
tccccgcctactcagggctctgtactctttggcacagttaatggaatgattggtcttgtt
acttcactttctgagagctggtacaatctgcttctagatgttcagaacagactcaacaaa
gtaatcaaaagcgttggcaagatcgaacactcattttggaggtcattccacacagagagg
aagaccgaaccagccacaggattcatagatggggatctgatcgagagcttcctggacatt
agccggccaaagatgcaggaggtcattgcgaatctacagatcgacgacggcagtgggatg
aaaagggagaccacggtggatgacttgataaaggtagttgaagaactgacgaggattcac
tga
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