Xenopus laevis (African clawed frog): 399048
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Entry
399048 CDS
T01010
Symbol
chm.L, chm, chm-a, chm-b, dxs540, ggta, hsd-32, rep-1, tcd
Name
(RefSeq) choroideremia
KO
K23460
Rab proteins geranylgeranyltransferase component A
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
xla01006
]
399048 (chm.L)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xla04131
]
399048 (chm.L)
Prenyltransferases [BR:
xla01006
]
Protein prenylation
Rab geranylgeranyltransferase
399048 (chm.L)
Membrane trafficking [BR:
xla04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
399048 (chm.L)
Endosome - Lysosome transport
Rab GTPases and associated proteins
399048 (chm.L)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GDI
RAE1_2_domI_C
NAD_binding_8
FAD_oxidored
Motif
Other DBs
NCBI-GeneID:
399048
NCBI-ProteinID:
NP_001083662
Xenbase:
XB-GENE-956392
UniProt:
Q6P7I1
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Position
8L:55002599..55083173
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AA seq
643 aa
AA seq
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MADDLPTEFDVVILGTGLPESIIAAACTRTGQQVLHVDARNYYGGNWASFTFSGLQTWIE
NCKQEPNTDFAESCKGQALDNEEIIPFNKRNQTIQNVEVFCYSSTEDGENIEEAGVLNLN
PALLTTVTTSADSESASQENASIDICKNYKSTETEKHDSPEGRSDLEEAASHDQGSADST
PETGATEEVEPFPTQANQQDSPKTVTYSQIVKEGRRFNIDLVSKFLYSRGLLIELLIKSN
VSRYTEFKNVTRILTYHDGKIEQVPCSRADVFASKQLSMVEKRILMKFLMHYVDYELHPE
DYQDYEASTFLEFLKSKQLTPTLQHFVLYSIAMVPESAKTVEGLKAMQHFLRCLGRYGNT
PFLFPMYGLGEIPQCFCRMCAVFGGVYCLHHSLECLVVDGDSKLCKAVIDHRGKRVDCKY
LVVEDSYLPEQICANVSYKQISRAVLITDCSILNSESNQEISVLTFPPADGQNAVYLTEL
CSSTMTCMKNTYVVHLTCSSTKATAKEDLEPVVQQLFTLSTEKDLETSDITKPKVLWALY
FNMRDSSGVPRQSYVGLPSNVYVCSGPDHCFGNDHAVQQAENIFHDLYPSEEFCPPAPNP
EDIIYDGECVQQEASESSIPVKAEASAETVTESCEDLEGQKAE
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgatctgcctacggagtttgatgttgtcatcctcggaactggccttcccgag
tccatcattgctgccgcatgcaccagaactgggcaacaggtccttcatgtagatgcgaga
aattactatggtgggaattgggccagctttacattttcagggttacagacctggattgaa
aactgtaagcaagaaccgaacactgatttcgctgaatcatgtaagggtcaagctttagac
aacgaagaaataattccattcaacaagagaaaccaaaccattcagaatgttgaggtcttc
tgttactccagtactgaagatggagaaaacattgaagaagccggagtacttaacctaaac
cctgcactgctaaccactgttaccacttcagcagattctgagtcagctagtcaagagaac
gcctctatagatatttgtaaaaattacaaatctacagaaacagaaaagcatgacagtcct
gaaggtagaagtgatctggaagaggcagcaagtcatgaccaagggtcagcagattctact
ccagagaccggtgccacagaagaggtggaaccattcccaacacaggccaatcagcaggac
tcgccgaaaactgttacttattcccagattgtgaaggaaggaagaagatttaatattgat
ttagtgtcaaagtttctgtattcccgaggattgttaattgagctgctcatcaaatcaaat
gttagtcgttacaccgagtttaagaatgttacccggattttaacgtatcacgatggaaaa
attgagcaggtaccttgttcaagagcagatgtatttgctagtaaacaactttccatggta
gaaaagaggatactaatgaaatttctaatgcactatgtagactatgagcttcatcctgaa
gactatcaagattatgaagcttcaacttttttagagtttttaaagtccaaacagttgact
ccaactttacagcactttgttctttactccattgcgatggtacctgaaagtgctaaaacg
gtagaagggttgaaagcaatgcaacacttccttaggtgccttggacgatatggcaatact
ccttttctcttccctatgtatggcttgggagagattccacagtgcttctgcaggatgtgc
gctgtattcggaggagtctattgtcttcaccattcgctggagtgcctagtagtcgatgga
gattcaaagctatgtaaagctgtcattgaccacagaggtaaacgagtagactgcaaatac
ctggttgtggaggatagctaccttcctgagcagatctgtgcaaatgtatcatacaaacaa
atctcccgagcagtccttattacagactgttctatactgaactcggaatcaaaccaagag
atttcagttttgacattcccaccagcagacggacaaaatgctgtctacttaactgaactc
tgctcatcaacaatgacttgcatgaaaaacacatacgttgtccatcttacatgttcatcc
acaaaagcaacagccaaagaagatctggaaccagttgtacaacaattatttactctgagc
acagagaaagatcttgaaacaagtgacatcacaaaaccaaaagttctttgggctctgtat
tttaatatgagggattcctctggtgttccgcgccaatcatatgttggacttccttcaaac
gtgtatgtttgcagtgggccagatcattgctttggaaatgatcatgcggtccagcaggca
gaaaatatattccacgatctttatccaagtgaggaattctgcccaccagctccaaaccca
gaagatattatctatgatggagagtgtgttcagcaagaagcaagtgaatcgagcattcct
gtaaaagcagaggcttccgctgaaactgtaacagaatcatgtgaagacttagaaggacag
aaggcagaatga
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