Xenopus laevis (African clawed frog): 399136
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Entry
399136 CDS
T01010
Symbol
trpc1.L, trp, trpc1, xtrpc1
Name
(RefSeq) transient receptor potential cation channel, subfamily C, member 1 L homeolog
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xla04040
]
399136 (trpc1.L)
Ion channels [BR:
xla04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
399136 (trpc1.L)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
LHD_TRPY1
Dsc3_C
Gag_p24_C
MTR4-like_stalk
TALPID3
Motif
Other DBs
NCBI-GeneID:
399136
NCBI-ProteinID:
NP_001083819
Xenbase:
XB-GENE-1004981
UniProt:
Q9PRI8
A0A974HKB9
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Position
5L:127970524..128000577
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AA seq
778 aa
AA seq
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MAALYQSTDSSSPNTFLALKDVREVKEETTLDERLFLLACEKGDYYMVKKLLEENSSEEL
NINSLDILGRNAITISIENENLDILQLLLNYGFQSTDALLVAIDSEVVGAVDILLNHQPK
WTTRPSIVKLMEQIQNPEYSTTMDVAPVILAAHRNNYEILTMLLKQDVSLPKPHAVGCEC
TLCTAKNKKDSLRHSRFRLDIYRCLASPALIMLTEEDPILRAFELSADLKELSLVEVEFR
NDYEELAQKCKTFAKDLLAQARNSRELEVILNHQSSDEPLDKRGLLEERMNLSRLKLAIK
YNQKEFVSQSNCQQFLNTVWFGQMAAYRRKHTCKKILIVLTVGIFWPVLSMCYLLAPKSQ
VGRIIHTPFMKFIIHGASYFTFLLLLNLYSLVYNEDEKNTMGPALERIDFLLIIWLIGMV
WSDVKQLWYDGLEDFLKESQNQLSFVMNSLYLATFALKVVAHNKFHSIAERKDWDAFHPT
LVVEGLFAFGNVLSYLRLFFMYTTSSILGPLQIFMGQMLQDFGKFLGMFLLVLFSFTIGL
THLYEKGYTTNEQKDCVGIFCEQQSNNTFHSFTGTCYALFWYIFSLAHVTLFVTRFNFSE
ELQSIVGALIVGTYNVVVVIVLTKLLVAMLHKSFQLIANHEDKEWKFARAKLWLSYFDDK
CTLPPPFNIVPSPKTICYLFNSISKWICSHTTSGRVKRQNSFKEWKSLRQKRDENYQKVM
CCLVHRYLTSMRQKMQSTDQATVENLNELCQDLSKFRNEMRDLLGFRTSKYAMFYPRN
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atggctgctctttatcagagcacagactcgtcttccccaaatacatttttggcccttaaa
gacgtcagagaagtgaaggaagagaccactttggatgaaaggcttttcttattggcctgc
gagaaaggtgattactatatggtgaaaaagcttttggaagaaaacagctcagaagaactg
aacatcaattcactggatatactcggaagaaatgctatcacaatatccattgaaaatgag
aacttggatatcctgcagcttcttcttaattatggtttccagtctacagatgccctcctt
gtggcaattgactccgaggtggtgggagctgtggatatcttgttaaatcatcaaccaaaa
tggacaacaaggccaagtattgtaaaacttatggagcaaatccagaatccagagtattcc
acaaccatggatgtggctcctgttatcttggctgctcatcggaataactacgagattctt
accatgcttctgaagcaggatgtctctctcccaaagcctcatgctgtgggctgtgagtgc
accctgtgtacagccaagaacaaaaaggacagcttgagacactccaggtttcgactcgat
atctatcgctgcttggccagtccggctttaattatgctgactgaggaggatccaattttg
agagcctttgaactcagtgcagacttgaaagagctcagccttgtagaggtggaatttcgg
aatgattatgaagaacttgctcaaaagtgtaagacttttgctaaagacttgctggcccag
gcccggaactctcgagagcttgaagtcattctaaaccatcagtccagtgatgagccttta
gacaagagagggttgcttgaggagcgcatgaacctgagccgcttgaaactcgccatcaag
tacaatcaaaaggagtttgtatctcaatctaactgccagcaatttctgaatactgtctgg
tttggccaaatggcagcgtacagacggaaacacacctgcaaaaagattttgattgtactt
accgttggaattttttggccagtcctctccatgtgctacttgctagcccccaaatcccaa
gttggacgtataattcataccccgtttatgaaatttattatacacggagcatcttacttt
acttttctgctgcttcttaacctatattctttggtttacaatgaggatgagaagaacacc
atggggccagcattagagagaatagatttccttcttattatatggcttataggaatggtt
tggtctgatgtgaagcagctatggtatgatgggctggaggattttttaaaggaatcccaa
aatcagctaagctttgtcatgaattccttatacttagccacttttgccctaaaagtagtg
gctcacaacaagttccattctattgcagagagaaaggattgggatgctttccatccaacg
ttggtagtagagggtttgtttgcatttggcaatgtgctcagctacctccgtctcttcttc
atgtacacaaccagttcaatcctggggccacttcagattttcatgggtcagatgctgcaa
gactttgggaagtttctcggcatgttcctgcttgtgctgttctccttcaccatcggtctg
acccacctgtacgaaaagggctacaccaccaatgaacagaaggactgtgtgggcattttc
tgtgagcagcaaagcaacaacactttccactcgttcactgggacgtgttatgctttgttc
tggtacatcttttccttggcacatgtgaccctctttgtcaccaggttcaattttagtgaa
gagcttcagtcaattgtaggggcacttattgtaggaacatacaatgtggttgttgtgatt
gtgctcaccaagctcctagtagctatgcttcacaaaagcttccaacttatagcgaatcat
gaggacaaggagtggaagtttgcccgggccaagctctggttgagctactttgatgacaaa
tgcacgctgcctccacctttcaacattgttccctctcccaaaactatctgctatcttttc
aacagcataagtaaatggatctgctctcatacgacttcagggagggtcaaacgccagaac
agctttaaggaatggaagagcctgaggcagaagcgagatgagaactaccagaaggtgatg
tgctgccttgtgcatcgctatctcacctccatgagacagaaaatgcaaagcactgatcag
gccaccgtggaaaacctaaatgagctctgtcaggatctctcaaaatttaggaatgagatg
agggacctgcttggctttcggacctccaaatatgcaatgttctacccgaggaattag
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