Xenopus laevis (African clawed frog): 399165
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Entry
399165 CDS
T01010
Symbol
smarca5.S, iswi, smarca5, SNF2H
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 S homeolog
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
399165 (smarca5.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
399165 (smarca5.S)
03036 Chromosome and associated proteins [BR:
xla03036
]
399165 (smarca5.S)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
399165 (smarca5.S)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
399165 (smarca5.S)
RSF complex
399165 (smarca5.S)
WICH complex
399165 (smarca5.S)
B-WICH complex
399165 (smarca5.S)
NORC complex
399165 (smarca5.S)
BRF complex
399165 (smarca5.S)
NuRF complex (fruit fly)
399165 (smarca5.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
HDA2-3
DEAD
Myb_DNA-binding
DBINO
Motif
Other DBs
NCBI-GeneID:
399165
NCBI-ProteinID:
NP_001083868
Xenbase:
XB-GENE-866389
UniProt:
Q6DFM0
Structure
PDB
PDBj
LinkDB
All DBs
Position
1S:complement(47808714..47832459)
Genome browser
AA seq
1046 aa
AA seq
DB search
MSAESTEQQPDTVVKEEKEGKDPMEVDSGDGKKQEQDGEAVKEEAMEDGEPDDDDDDDDS
LKSKEGNEMDPAYEKKRKTDRSNRFDYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRL
KKDEKQDLLSAGDNRHRRTEQEEDEELLTESSKTTNVCTRFEDSPAYVKSGKLRDYQVRG
LNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRSIPGPHMVLVPKSTLHNWMAE
FKRWVPSLCAVCLIGDKDHRAAFVRDVLLPGEWDVCVTSYEMLIREKSVFKKFNWRYLVI
DEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDS
WFDTNNCLGDQKLVERLHMVLKPFLLRRIKADVEKSLKPKKEIKIYVGLSKMQREWYTKI
LMKDIDILNSSGKTDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDLHLATNSGKMMV
LDKLLPKLKEQDSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHEERQESIIAYNA
PGSTKFIFMLSTRAGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRF
ITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKLGKDEMLQMIRHGATHVFASKDS
EITDEDINAILERGEKKTAEMNEKLSNMGESSLRNFTMDTESSVYNFEGEDYREKQKMAF
TQWIEPPKRERKANYAVDAYFREALRVSEPKVPKAPRPPKQPNVQDFQFFPPRLFELLEK
EILYYRKTIGYKVPRNPDLPNSAQVQKEEQLKIDEAESLNDEELEEKEKLLTQGFTNWNK
RDFNQFIKANEKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKTMAQIERG
EARIQRRISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKE
NVYDELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENLELEEKEKAEKKKRG
PRPSSAQKRKVDGTPDGRGRKKKLKL
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaaagcaccgagcagcagccggacaccgtagtgaaagaggagaaagaaggg
aaggatcctatggaagtggatagtggcgatggaaagaaacaagagcaggacggggaagcg
gtgaaagaggaagcgatggaggatggtgaacctgatgatgatgacgatgatgatgattct
cttaagtcgaaagaaggcaatgagatggatccagcttatgaaaaaaagaggaaaactgac
cgctccaacagatttgactaccttttgaaacagacagaattgtttgcacatttcattcaa
ccagctgcacagaagaccccaacctcaccattaaaaatgaaacccggacgtcctcgtcta
aagaaagatgagaaacaagatttgctgtctgcgggagataatcgccatcgcaggacagaa
caagaagaggatgaggagcttttaacggaaagctccaaaacaacaaatgtttgcaccaga
tttgaagattcaccagcatatgtaaaatcaggtaaactaagggattaccaagtaagagga
ttaaattggttgatatcgctgtatgaaaatggcatcaatgggatcttggctgatgaaatg
ggtctaggaaagactttgcagaccatcagtcttttggggtacatgaagcactacagaagt
atccctgggccacacatggtgttggttccaaagtcgaccttgcacaactggatggcagaa
ttcaagagatgggttccttcactttgtgctgtctgtctcattggtgacaaagatcataga
gctgcatttgtccgtgatgtacttctaccaggagagtgggatgtatgcgtaacctcttat
gaaatgttaatcagggaaaagtctgttttcaaaaagtttaattggagatacttggttatt
gatgaagctcacaggatcaaaaatgagaaatctaagctgtctgaaattgtgagagagttt
aagactacaaatcgtcttttactcacagggacaccacttcagaataatctgcatgagctg
tgggcgttactaaactttctgttaccagatgtctttaattcttctgaggactttgactct
tggtttgataccaacaactgcttaggagatcagaaattagttgaacgtcttcatatggtt
ttaaagcccttcctcctccgccgtattaaggccgatgtggaaaaaagtttaaaacccaaa
aaggaaattaaaatatacgtcggtctcagcaaaatgcaacgtgaatggtatacaaagatt
ttaatgaaagatatagatatattgaactcttcaggaaagactgacaaaatgcgactgctg
aatatcctgatgcaacttaggaaatgttgcaatcatccttacctttttgatggtgctgag
cctggcccaccatacacaacagatttgcacttggcaacaaatagtggcaaaatgatggtc
ctagacaaactgctgcctaaacttaaagaacaagattcacgtgtactaatattcagccag
atgacaagagtcttagacattctagaagattactgcatgtggaggaattatgaatattgt
cgactagatgggcaaacaccgcatgaagaaagacaagaatccatcattgcatacaatgca
cctggcagcacaaaattcatctttatgttgagtacccgtgcaggaggccttggaataaat
cttgctactgctgatgttgttattatatatgattcagactggaatccgcaagttgacctt
caggctatggatagagcacacagaattggccaaacgaaaactgtacgtgtgttcagattt
ataacggataatacagttgaagagcgtattgtggaacgcgctgaaatgaaactgcgcttg
gattcaatagttattcagcaaggtagattagtggaccaaaacttaaataaactaggaaag
gatgaaatgcttcaaatgatcagacatggtgcgactcatgtatttgcatcaaaggatagt
gaaatcacagacgaagacattaatgcaatcttagaaagaggggaaaagaagactgcagaa
atgaatgagaaactctcaaacatgggcgaaagttcacttagaaacttcaccatggatact
gaatccagtgtttataactttgaaggtgaagattacagagaaaagcaaaagatggcattt
acacagtggattgaaccaccaaaaagagagcgaaaagccaattacgctgtggatgcgtat
ttccgggaagcacttcgtgttagtgagccaaaagtaccaaaggctcccagacccccaaaa
cagccaaatgttcaagatttccagtttttccctccacgtctgtttgagttattggaaaaa
gaaattctatattacagaaaaacaattggctacaaggtaccacgcaatcctgatctgcca
aattcagcacaagtgcaaaaggaggaacagttaaaaattgatgaggctgagtccctcaat
gatgaagagttagaagagaaagagaaactgttaactcagggtttcactaactggaataag
agagattttaaccagtttatcaaagctaatgagaaatggggtcgtgatgatattgaaaat
attgcacgtgaagtggaaggcaagacacccgaggaagttattgagtattcagccgtcttc
tgggaaaggtgcaatgagcttcaagatatcgagaagaccatggctcaaatagaaagggga
gaggccagaatacagaggaggattagcataaagaaagctctagacacaaagattggaaga
tacaaagcaccgtttcatcaactgaggatttcttatggtacaaacaaaggaaagaattac
acagaggaagaggatcgttttctcatttgcatgttacacaagctaggctttgataaggaa
aatgtgtatgatgagctgcggcagtgtatacgaaactctccccagtttagattcgactgg
ttcttaaaatcaagaacagcaatggagctccaaagaagatgcaataccttaatcacttta
attgaaagagagaaccttgaacttgaggaaaaagagaaagctgagaagaagaaacgcgga
ccaaggccttcatcggctcaaaaacgaaaggttgatggaacacctgatggaagaggaaga
aagaagaaactgaagctctaa
DBGET
integrated database retrieval system
