KEGG   Xenopus laevis (African clawed frog): 399167
Entry
399167            CDS       T01010                                 
Symbol
rbm8a.S, rbm8, rbm8-A, rbm8a, rbm8a-A, rbm8a-b, rbm8b, tsunagi, Y14, znrp, zrnp1
Name
(RefSeq) RNA-binding protein 8A-A
  KO
K12876  RNA-binding protein 8A
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03013  Nucleocytoplasmic transport
xla03015  mRNA surveillance pathway
xla03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    399167 (rbm8a.S)
  09122 Translation
   03013 Nucleocytoplasmic transport
    399167 (rbm8a.S)
   03015 mRNA surveillance pathway
    399167 (rbm8a.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xla03019]
    399167 (rbm8a.S)
   03041 Spliceosome [BR:xla03041]
    399167 (rbm8a.S)
Messenger RNA biogenesis [BR:xla03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     399167 (rbm8a.S)
Spliceosome [BR:xla03041]
 Complex C
  Other components
   EJC/TREX
    399167 (rbm8a.S)
SSDB
Motif
Pfam: RRM_1 RRM_3 RRM_5 RRM_7
Other DBs
NCBI-GeneID: 399167
NCBI-ProteinID: NP_001083872
Xenbase: XB-GENE-6251029
UniProt: Q9DF42 A0A974C5Q9
LinkDB
Position
8S:complement(101712984..101716757)
AA seq 174 aa
MADVLDLHEAGGEDFAMDEDGDDSIHKLKEKAKKRKGRGFGADEGTKTRIREVYDSVEQD
GDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVE
YETYKEALAAMEGLNGQDLMGQPVSVDWGFVRGPPKGKRRSGRRRSRSPERRRR
NT seq 525 nt   +upstreamnt  +downstreamnt
atggcggatgtactggatcttcacgaggctggcggggaggacttcgctatggatgaagat
ggggacgacagtatccacaaactgaaggaaaaggccaagaaaaggaagggcagaggattc
ggtgcagatgaaggcaccaaaacgaggatccgggaagtctatgacagtgtggagcaggat
ggagacgagccgggaccccagagatctgtggaaggctggatcctgtttgtcaccggggtg
catgaagaggccacagaggaggatatacacgataagtttggcgaattcggtgagatcaag
aacatccacctgaatctggaccggaggacgggtttcctgaagggctacgcactggtggaa
tatgagacgtacaaagaagctctggcggccatggaagggttaaacggacaagacctcatg
gggcagccagtcagtgtagactggggattcgtgagaggccccccgaaaggaaagaggaga
agtgggaggaggaggagccgaagcccagaaagaagacgacgttag

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