KEGG   Xenopus laevis (African clawed frog): 399199
Entry
399199            CDS       T01010                                 
Symbol
pafah1b1.L, LIS1, lis2, mdcr, mds, pafah, pafah1b1, pafah1b1-b
Name
(RefSeq) lissencephaly-1 homolog
  KO
K16794  platelet-activating factor acetylhydrolase IB subunit alpha
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla00565  Ether lipid metabolism
xla01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:xla00001]
 09100 Metabolism
  09103 Lipid metabolism
   00565 Ether lipid metabolism
    399199 (pafah1b1.L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:xla03036]
    399199 (pafah1b1.L)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:xla04147]
    399199 (pafah1b1.L)
Chromosome and associated proteins [BR:xla03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    399199 (pafah1b1.L)
Exosome [BR:xla04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   399199 (pafah1b1.L)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_Nup120_160 WD40_RFWD3 Beta-prop_IFT140_1st LisH Beta-prop_SPT8 Beta-prop_RIG_2nd LisH_PAC1 Beta-prop_DCAF12 eIF2A Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Nucleoporin_N Beta-prop_NUP159_NUP214 Pox_A_type_inc Beta-prop_WDR11_2nd ARMC9_LisH LisH_2 SutA-RBD
Other DBs
NCBI-GeneID: 399199
NCBI-ProteinID: NP_001083934
Xenbase: XB-GENE-17330834
UniProt: Q90ZL4
LinkDB
Position
2L:48676639..48697682
AA seq 410 aa
MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDIKYAGLLEKKWTSVIR
LQKKVMELESKLNEAKEEFTSGGPIGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF
SVMVTASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ
GFECLRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV
RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISDATGSE
TKRSGKPGPFLLSGSRDKTIKMWDISIGMCLMTLVGHDNWVRGVQFHPGGKFILSCADDK
TIRIWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR
NT seq 1233 nt   +upstreamnt  +downstreamnt
atggtgctgtcacaaagacaaagagatgagctaaatcgagcaatagcggattacctacgt
tccaatggttatgaagaggcctattctgtttttaagaaggaggcagaacttgatatgaat
gaagagttagatattaagtatgcaggactcttggagaagaaatggacatctgttatcaga
ttacaaaaaaaggttatggaattagaatccaaattaaatgaagcaaaagaagagtttaca
tctggaggacctataggccaaaagcgagaccccaaagaatggatacctcggccacctgaa
aaatatgcactcagtggtcatcggagtcctgtcactcgtgttatttttcatccagtgttt
agtgttatggtcacggcatcagaagatgcaacgatcaaggtgtgggactatgagactgga
gattttgaacgcacactcaaggggcacacagactctgtgcaggatatatcttttgaccat
tctggaaagctgctggcctcttgttctgcggatatgactattaagctatgggatttccaa
ggttttgagtgcctcaggaccatgcatggtcatgatcataatgtttcctcagtagccatt
atgcccaatggagatcatatagtgtctgcctcaagggataaaaccattaagatgtgggag
gttcagactgggtattgtgtgaagactttcacagggcacagagagtgggttcgcatggtg
aggccaaaccaggatggtacacttattgccagctgttctaatgaccaaactgttcgtgtt
tgggttgtagctacaaaggaatgcaaagcagaacttagagagcatgaacacgtggtagaa
tgcatttcttgggcaccagaaagctcgtattctaccatatcagatgctacaggatctgag
actaaaagaagtggtaaacctggtccttttcttctgtctggttccagagataaaactata
aagatgtgggacattagcattggaatgtgcctaatgacacttgttggacatgataattgg
gtgcgtggagttcaattccatccaggaggaaagtttattcttagttgtgctgatgataaa
actatacgcatttgggactacaagaacaaacgctgcatgaaaacccttaatgctcatgaa
cattttgttacctctttggatttccacaagactgcgccgtatgtggtgactggaagcgta
gatcaaacagtaaaagtgtgggagtgccgttga

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