Xenopus laevis (African clawed frog): 399241
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Entry
399241 CDS
T01010
Symbol
smarcd1.L, smarcd1
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 L homeolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
399241 (smarcd1.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
399241 (smarcd1.L)
03036 Chromosome and associated proteins [BR:
xla03036
]
399241 (smarcd1.L)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
399241 (smarcd1.L)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
399241 (smarcd1.L)
PBAF complex
399241 (smarcd1.L)
GBAF(ncBAF) complex
399241 (smarcd1.L)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
399241
NCBI-ProteinID:
NP_001136258
Xenbase:
XB-GENE-491108
UniProt:
A1A5J8
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Position
2L:157197666..157216846
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AA seq
507 aa
AA seq
DB search
MAARAGFQSLTPGGSGSTAAALGPGTPGPAVRMGPAPGQGIYRSPMPGAAYPRPGMLPGS
RMTPQGPAMGPPGYGGSPAARPGIAQSGMDQSRKRPAPQQIQQVQQAAQNRNHSAKKKKM
ADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISN
TFNPAKSDAEDGEGTVASWELRVEGRLLEDAALSKYDATKQKRKFSSFFKSLVIELDKDL
YGPDNHLVEWHRTPTTQETDGFQVKRPGDLNVRCTVLLMLDYQPPQFKLDPRLARLLGIH
TQTRPVIIQALWQYIKTHKLQDPHEREFIICDKYLQQIFESQRMKFSEIPQRLHALLMPP
EPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAALDNKIHETI
ETINQLKIQREFMLSFARDPQGFINDWLQSQCRDLKAMTDVVGNPEEERRADFYFQPWAH
EAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgggctggattccaatcattgaccccgggggggtccggttcaacggcggct
gcactgggtcccgggacccctggcccagcagtgagaatgggtcccgcccccgggcagggg
atttaccgttctccaatgcctggagctgcttacccgagacccggtatgctgcctggcagt
cgaatgactcctcagggaccagcgatgggccctcctggttatggtggaagtccagctgct
cggccaggcatagcccagtcaggcatggaccagtctcggaaacgtcctgcgcctcaacaa
atacagcaggtgcaacaggctgctcagaataggaaccatagtgctaagaagaagaaaatg
gctgataagatactacctcagaggattagggaactggtacccgaatcccaggcttacatg
gatctgctagcgtttgagagaaagctggatcagacaattatgaggaaacggcttgatatt
caggaagctttgaagagaccaataaagcaaaagagaaaacttcgcatattcatttccaat
actttcaaccctgcaaaatcagacgcagaagatggagagggaactgttgcttcatgggag
ctgcgggtggagggccgtctccttgaggacgcggcactatctaaatatgatgccaccaaa
cagaagaggaagttctcgtccttttttaagtcgctggtcattgagttggataaagacctg
tatgggccggataatcacctggtggagtggcacagaacccctaccacacaggagactgat
gggtttcaggtgaagcgcccaggggatttgaacgtgcgctgcacagtgttactgatgctt
gactatcagccaccacagtttaaacttgatccccgactggctcgcctccttgggatccac
actcagactcgtccagtcatcattcaagctctgtggcagtacatcaagactcacaaactt
caagatcctcatgaacgggaatttataatatgtgacaaatatttgcagcagatatttgag
tctcaaaggatgaagttttcagagatccctcagagattgcatgctctcctcatgcctcca
gaaccaatcataatcaatcatgtcattagtgttgaccccaatgatcagaagaaaaccgct
tgttatgacattgatgtagaagttgatgatactttaaaaactcagatgaactcctttctg
ttgtccaccgcaagtcagcaggagatagctgctctagataacaagatacacgagacaatt
gaaactatcaatcaattaaagattcagagggaatttatgttgagctttgcccgtgaccct
caaggatttattaatgactggttacagtcacagtgccgggacctcaaagcaatgactgat
gtggtgggtaatcctgaagaagaacgtcgagctgatttttacttccaaccatgggctcat
gaggctgtatgccggtatttctactccaaggtgcagcaaagacgtcaggagctggaacag
gctctcgggatccgaaatacataa
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