KEGG   Xenopus laevis (African clawed frog): 399362
Entry
399362            CDS       T01010                                 
Symbol
eif4a3.1.S, ddx48, ddx48-a, eif4a3, eif4a3-a, eif4a3-B, eif4a3.L, eif4a3.S, eif4aiii, nmp265, nuk34, XeIF-4AIII
Name
(RefSeq) eukaryotic initiation factor 4A-III-B
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03013  Nucleocytoplasmic transport
xla03015  mRNA surveillance pathway
xla03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    399362 (eif4a3.1.S)
  09122 Translation
   03013 Nucleocytoplasmic transport
    399362 (eif4a3.1.S)
   03015 mRNA surveillance pathway
    399362 (eif4a3.1.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xla03019]
    399362 (eif4a3.1.S)
   03041 Spliceosome [BR:xla03041]
    399362 (eif4a3.1.S)
   03009 Ribosome biogenesis [BR:xla03009]
    399362 (eif4a3.1.S)
   03012 Translation factors [BR:xla03012]
    399362 (eif4a3.1.S)
Enzymes [BR:xla01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     399362 (eif4a3.1.S)
Messenger RNA biogenesis [BR:xla03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     399362 (eif4a3.1.S)
   mRNA cycle factors
    Stress granule specific factors
     399362 (eif4a3.1.S)
Spliceosome [BR:xla03041]
 Complex C
  Other components
   EJC/TREX
    399362 (eif4a3.1.S)
Ribosome biogenesis [BR:xla03009]
 Eukaryotic type
  90S particles
   Helicases
    399362 (eif4a3.1.S)
Translation factors [BR:xla03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    399362 (eif4a3.1.S)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_22 Cas3-like_C_2 AAA_30 TniB Flavi_DEAD
Other DBs
NCBI-GeneID: 399362
NCBI-ProteinID: NP_001084200
Xenbase: XB-GENE-5773753
UniProt: O42226
LinkDB
Position
5S:complement(30451126..30469237)
AA seq 414 aa
MAAAAVAGVAGLTTAHAKRLLREEDMTTVEFQTSEEVDVTPTFDTMGLREDLLRGIYAYG
FEKPSAIQQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQIRETQALILAPTKE
LARQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLR
TRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPI
RILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKM
REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNN
RELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq 1245 nt   +upstreamnt  +downstreamnt
atggcggccgcagctgttgcaggagttgccgggttgaccacggcgcacgcgaagcggctt
ttacgggaggaggatatgaccaccgtggagttccagaccagcgaagaagtggatgtaacg
ccaacgtttgatacgatggggctgagggaagaccttctgagaggcatctatgcttatgga
tttgagaaaccatcggctatacaacagaaggcaatcaagcagatcatcaaaggaagggat
gtgatcgcacaatcacagtctggtacaggcaaaacagcaactttttgtgtttctgtgcta
cagtgtttggatattcagatccgtgaaacccaagccttgattttagcacccaccaaagag
ttagcacggcaaattcagaaggtgttgcttgctttgggggactacatgaatgtgcagtgt
catgcgtgtattggaggcacaaatgttggagaggatatccgaaaattggattatgggcag
cacgttgttgctggaacaccagggcgtgtttttgatatgattcgacgcagaagtttaaga
actcgggccattaaaatgttagtgctggatgaagctgatgaaatgttgaataagggtttc
aaggagcaaatttatgatgtatacaggtatctgcctccagcaacacaagtttgtttaatc
agtgctaccctgccacatgaaatcctggaaatgaccaataagtttatgactgatcccatc
cgtatccttgtgaaacgtgatgagttgacactggaaggcatcaagcagttttttgtggca
gtggagagagaagagtggaaatttgatactttgtgtgatttatatgacactttgactatt
acacaagctgtaatcttctgcaacaccaaaagaaaggtagattggttgactgaaaaaatg
agagaagcaaatttcacagtttcgtcaatgcatggtgatatgccccaaaaggagagagag
tcaatcatgaaagaattccgatctggtgcaagccgagtcctcatatcaacggacgtctgg
gcccgaggattggatgtgccacaggtctccttgattatcaactatgatcttcccaataac
cgagaattgtacattcacagaattggccgatcaggaagatatggaagaaagggtgttgcc
attaactttgtcaagaatgatgacatccgtattttaagagatattgagcagtactattcg
acccagattgatgaaatgccaatgaacgttgctgatcttatttga

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