Xenopus laevis (African clawed frog): 399382
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Entry
399382 CDS
T01010
Symbol
ddx5.L, ddx5
Name
(RefSeq) DEAD-box helicase 5 L homeolog
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
399382 (ddx5.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
399382 (ddx5.L)
03009 Ribosome biogenesis [BR:
xla03009
]
399382 (ddx5.L)
Enzymes [BR:
xla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
399382 (ddx5.L)
Spliceosome [BR:
xla03041
]
Complex A
U1 snRNP components
U1 related factors
399382 (ddx5.L)
Complex B
399382 (ddx5.L)
Ribosome biogenesis [BR:
xla03009
]
Eukaryotic type
Pre-60S particles
Helicases
399382 (ddx5.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
399382
NCBI-ProteinID:
NP_001084230
Xenbase:
XB-GENE-1010001
UniProt:
Q9I8S3
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All DBs
Position
9_10L:54473911..54481713
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AA seq
608 aa
AA seq
DB search
MPGFNDRDRGRDRGFGGGPRFGGNRGGTSGKYGNPGERLMKKKWNLDELPKFEKNFYQEH
PDVVRRTPQECDQYRRSKEITVRGINCPKPILNFNEASFPANVMEAIKRQNFTEPTPIQG
QGWPVALSGLDMVGVAMTGSGKTLSYLLPGIVHINHQPFLQRGDGPILLVLAPTRELAQQ
VQQVAAEYGRACRLRSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLNRC
TYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYVHINI
GALELSANHNILQIVDVCNDGEKDDKLVRLMEEIMSEKENKTIVFVETKRRCDDLTRRLR
RDGWPAMGIHGDKSQQERDWVLNEFKHGKSPILIATDVASRGLDVEDVKFVINYDYPNSS
EDYIHRIGRTARSSKTGTAYTFFTPGNIKQVNDLISVLREANQAINPNLLQLVEDRGRFR
GRGGMNDRRDRFSSGKRGGWDRENYDRGFGGKRDFGNKSQNGFGNKSQNGFGAQNYNGNF
NSYGSNVQSGFRAGAQNGTYQNGYSTQQTGYSAPPMQNGMTQQAYTYPTATATAPAVIGY
PMPTSYPQ
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgccaggatttaacgacagggatcgaggccgagatagaggatttggaggtggtcctcgt
tttgggggaaacagaggtggtacatctggcaaatatggaaaccccggggagcggcttatg
aaraaaaaatggaacctggatgaactgccaaaatttgagaagaatttctatcaagaacat
cctgatgttgtgagacgaacaccgcaagaatgtgatcagtacagaagaagcaaagagata
accgtacgagggattaactgtccaaaaccaattctgaatttcaatgaagcaagtttccca
gcaaatgtcatggaagcgattaaacggcagaacttcactgagcccactcccatccaagga
cagggatggccagtggctctaagtggactggatatggtcggtgttgcaatgactggatca
ggaaaaactctttcttacctgcttcctgggattgtccacatcaaccatcaaccattccta
cagcggggagatggtccaattcttttggtgctggcaccaaccagggaattggctcaacag
gttcagcaagtggctgcagagtatggcagagcttgtcgtctgaggtccacctgtatttat
ggcggggccccaaagggaccacagatccgtgatctggaaagaggagttgaaatctgcatt
gcaacacctggaaggctgatagatttccttgaagcaggaaagaccaatctgaacagatgc
acatatttggtgcttgatgaagcagacagaatgcttgacatgggctttgagcctcagata
agaaagatagtagaccagattcgacctgacagacaaacactgatgtggagtgccacttgg
cctaaagaagtccggcaacttgctgaagattttctgagagactatgttcatattaacatc
ggtgccctggaactcagtgccaaccacaatatccttcagattgttgatgtgtgtaacgat
ggtgagaaggatgacaagcttgtccgtttgatggaggaaattatgagtgaaaaagaaaat
aagaccatagtatttgttgagaccaaacgacgatgtgatgatttgactcgcaggttgagg
agggatgggtggcctgcaatgggaattcatggtgataagagccagcaggagcgtgactgg
gtcttaaatgagtttaaacatggtaaatcacctattctgattgctacagatgttgcttcc
agaggtctagatgtagaagatgtgaaatttgtcatcaattatgactaccccaactcctca
gaggattatattcaccgaatcggaagaaccgcccgcagcagcaaaactggcacagcatac
accttctttaccccaggaaacattaagcaagtcaatgacctgatctccgtcctccgggaa
gcaaaccaagctatcaaccccaacctattgcagctggtagaggacagagggcgcttcaga
ggcagaggaggaatgaacgacagacgtgaccgtttctcttcaggcaagcggggtgggtgg
gaccgggaaaattatgaccgtgggtttggcggaaagagagactttggcaacaaatcccaa
aatggctttggcaacaaatcccaaaatggctttggggcacaaaattacaatggaaacttt
aacagctatggcagcaatgttcagagtgggttccgggcaggtgctcagaatggcacatac
cagaatggctacagcacccagcagactggctacagtgcacctccaatgcagaatggaatg
acccagcaggcatatacatacccaactgccacggctacagcaccagctgtcataggttat
ccaatgccaacatcctacccccaataa
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