Xenopus laevis (African clawed frog): 414534
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Entry
414534 CDS
T01010
Symbol
cnot10.S, cnot10, cnot10-a, cnot10-b
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-B
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
414534 (cnot10.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
414534 (cnot10.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
414534 (cnot10.S)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_14
ARM_TT21_N
TPR_19
TPR_12
ARM_TT21
TPR_8
TPR_7
TPR_MalT
DUF6058
Motif
Other DBs
NCBI-GeneID:
414534
NCBI-ProteinID:
NP_001084582
Xenbase:
XB-GENE-5755077
UniProt:
Q6NU53
A0A974HDQ4
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Position
6S:42871545..42943240
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AA seq
748 aa
AA seq
DB search
MAADKAGEQGAEKHEGSANCSGISDQEKELSRSALQAFTAGNYEACLQHLGELKEINKDD
YKVILNAAVAEFYKSDKTTTDLLKQTLNQLRNEVHSAVDEMDSLDDVENSMLYYNQAVIL
YYLRQHMEAISVGEKLYQFIEPFEEKFAHAVCFLLVDLYLLTFQTEKALHLLVVLEKMIL
QGNSNNKNGKNNETNSNANNKELFAQKGDGGVNVEAAKSKIHQYKVRAYIQMKSLKACKR
EIKSVMNTSGNSAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAEYPGFMKTGECVRCMFWN
NLGCIHFAMGKHNLGLFYFKKALHENDNACAQLPSENSDPGKKFSGRPMCTLLTNKRYEL
LYNCGIQLLHIGRPLAAFEYLVEAVQVYHSNPRLWLRLAECCIAANKGTSEQETKGLPSK
KGIVQSIVGQGYHRKIVLASQSVQNLLYNDGESSAIPVASMEFAAICLRNALLLLPEDQL
ETKQENGSKASSQTVNTDSSGESSDVCSNKNHEGDKFIPAPPSSPLRRQEVENLRCSVLA
CIAYVALALGDNLMALNHAEKLLQQPRLSGSLKFLGHLYAAEALISLDRISDAITHLNPE
NVTDVSLGVSSNEQEQGSDKGENEPMESAGKQIPQCYPSSVTSARTMMLFNLGSAYCLRS
EYDKARKCLHQAASMIHPKEIPPEAILLAVYLELQNGNTQLALQIIKRNQLLPSIRMMSD
LRKKPLFQTMHQPMQPIQMPAFAAAQRK
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagacaaagcaggagaacagggagctgaaaaacatgagggctctgctaattgc
tcaggcatatctgaccaggagaaggaattgtccagaagtgcattacaagcatttacagct
ggtaattatgaagcctgcctacagcatctaggagaacttaaagaaatcaacaaagatgac
tataaagtgattctgaatgctgcggtagctgagttttataagagcgataaaacaacaact
gacctattgaagcaaacacttaaccaattaaggaacgaggttcattctgctgttgatgaa
atggatagcttagatgacgtggagaacagtatgttgtattacaatcaggctgtcattttg
tattatctgcgtcagcacatggaagccatttcagttggggagaaactttatcagtttatt
gaaccatttgaagagaaatttgcacatgctgtatgctttctgcttgtagatttatatctt
ctgacattccaaactgaaaaagccttgcacctgttggtggttcttgaaaaaatgatttta
caggggaacagcaataataaaaatggtaaaaataatgagacaaacagcaatgctaacaat
aaagagctctttgcacagaagggtgatggaggagttaatgtagaagcagcaaaatctaaa
attcatcagtataaggtgagagcctacattcaaatgaagtctctaaaagcatgtaagagg
gaaataaagtctgtgatgaacacatctggaaattcagctccctctctgtttctgaaaagt
aattttgaatacctcagaggcaattaccgaaaagcagtgaagctcttgaattcatcaaat
attgctgagtatcctggcttcatgaaaacaggtgaatgtgtgagatgtatgttttggaat
aatcttggttgcattcactttgccatgggaaagcacaatctaggacttttctacttcaaa
aaggctctccatgaaaatgataatgcatgtgcacagttaccttctgaaaactctgatcca
gggaagaaattttcaggcagaccaatgtgtaccctgttgaccaacaagcggtatgaactt
ctgtataattgtggaattcagcttttgcatattggaagacctcttgcagcttttgagtat
ttggtagaagccgtacaagtatatcattcaaaccctcgtctttggttaagattagcagag
tgctgcatagctgctaacaaaggtacttcagaacaagaaactaaaggtctaccaagcaag
aaagggatagtacaatccattgtaggccaaggctatcacaggaaaattgttctagcttct
cagtcagtacagaatcttctctacaatgatggagagtcttcagctattcctgttgccagc
atggagtttgctgcaatatgtctgagaaatgcattgcttcttttgccagaagaccagttg
gaaactaagcaagaaaatggttcaaaggctagtagtcagacagttaatacagactctagt
ggggagagcagtgatgtgtgcagcaataaaaaccacgagggggataaattcattccagct
ccaccttcctctcccctgagaaggcaagaagtagaaaacttaaggtgttctgttcttgct
tgcattgcctatgttgcccttgctttgggtgataacctcatggcactaaaccatgctgaa
aaacttctacagcagccacggttgtcgggatcccttaagttcctgggccatttatatgct
gcagaagctctcatctccttggacaggatttcggatgccatcactcatctgaaccctgag
aatgtcacagatgtgtctctaggggtctcttccaatgagcaggagcaaggttctgacaaa
ggagaaaatgagcccatggaatctgctggtaaacagatacctcagtgttacccaagttca
gtaacttctgctcgaacaatgatgctgtttaatcttgggagtgcttactgtttacgtagc
gaatatgacaaagcacgcaagtgtctacaccaggctgcctccatgatccaccctaaagaa
atcccaccagaggcaatcctgcttgcagtgtatcttgagctacagaatggcaatacccag
ctggccttgcagatcatcaaaagaaaccagcttctcccgtccattagaatgatgtcagat
cttcgaaagaagccattattccagacaatgcatcagccaatgcagccgattcagatgcca
gcttttgctgctgctcagagaaaatga
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