Xenopus laevis (African clawed frog): 414679
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Entry
414679 CDS
T01010
Symbol
lsm8.S, lsm8, lsm8/naa38, naa38
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated S homeolog
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03018
RNA degradation
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
414679 (lsm8.S)
09123 Folding, sorting and degradation
03018 RNA degradation
414679 (lsm8.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
414679 (lsm8.S)
03041 Spliceosome [BR:
xla03041
]
414679 (lsm8.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
414679 (lsm8.S)
mRNA degradation factors
5'-3' decay
Lsm complex
414679 (lsm8.S)
Spliceosome [BR:
xla03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
414679 (lsm8.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
414679
NCBI-ProteinID:
NP_001084715
Xenbase:
XB-GENE-986009
UniProt:
Q6NTS4
A0A974HRA7
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All DBs
Position
3S:complement(79767957..79773099)
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AA seq
96 aa
AA seq
DB search
MASALENYINRTVAVITADGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSSLDLGNIRAEPLNSVVN
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagcgctggagaattatatcaaccgaacagtcgctgtaattacagcagatggt
agaatgattgtgggtacactaaaaggttttgatcaaaccataaacttgattttggatgaa
agccatgaacgagtattcagctcatctcaaggagtagagcaagtagtgctgggtctttac
attgtgagaggagacaatgtggcagtcattggagaaattgatgaagagacagactcttca
ctggatttgggaaatattcgagcagaaccactaaactcagtggtgaattga
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