KEGG   Xenopus laevis (African clawed frog): 414700
Entry
414700            CDS       T01010                                 
Symbol
wdr48.S
Name
(RefSeq) WD repeat-containing protein 48 isoform X1
  KO
K15361  WD repeat-containing protein 48
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    414700 (wdr48.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xla03400]
    414700 (wdr48.S)
DNA repair and recombination proteins [BR:xla03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     414700 (wdr48.S)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz DUF3337 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st Beta-prop_SPT8 NBCH_WD40 Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_DCAF12 WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_IP5PC_F Beta-prop_NWD2_C WDR54 Beta-prop_Vps41 WD_LRWD1 WD40_RFWD3 Nucleoporin_N WD40_like Tfb2_C Beta-prop_VPS8
Other DBs
NCBI-GeneID: 414700
NCBI-ProteinID: XP_041423274
Xenbase: XB-GENE-976376
UniProt: A0A8J1L2R6
LinkDB
Position
6S:complement(7827162..7856130)
AA seq 690 aa
MAAHHRQNTAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWNVN
QHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYV
KALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMG
TVIVSGSTEKVLRVWDPRTCQKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLG
QQRCIATYRVHDEGVWALQVNEGFTHVYSGGRDRKIYCTDLRNPDIRLLICEEKAPVLKM
ELDRSADPPVALWVSTTKSSVNKWPIKGILNFRTSGDYENDCSTPLSPICSQPDQTIKGG
ASIIQCNILNDKRHILTKDTNNNVAYWDVLKACKVEDLGKVDFEEEIKKKFKMVYVPNWF
SVDLKTGMLTITLDESDCFAAWVSAKDAGFSSSDGSDPKLNLGGLLLQALLEFWPRTHIN
PMEEEENEVNHVANGEQENRIQKGNGYFQVPPHTPVIFGEAGGRTLFRLLCRDSGGETES
MLLNETVPQWVIDITVDKNMPKFNKIPFYLQPHSSSGAKTLKKDRLSASDMLQVRKVMEH
VYEKIINADTESQTTSSSNNEKPGEQEKEEDIAVLAEEKIELLCQDQNENCRWDGIQSDS
LYKAAQDCLTRKLQATSENRYWTLTWTSGL
NT seq 2073 nt   +upstreamnt  +downstreamnt
atggcggcacatcacaggcagaacacggctgggcggaggaaagttcaggtatcgtatgta
atcagagatgaagtggagaagtacaatcgcaatggggtgaacgctctgcagctggatcct
gcgctgaacaggctcttcacagcgggccgggattctatcatcaggatatggaatgtgaac
cagcacaagcaagatccgtatattgcatctatggaacaccacaccgactgggtcaacgac
attgtcctctgctgcaatggcaaaacgttaatctctgcatcttcggatactactgttaaa
gtatggaatgcacacaaggggttttgtatgtcaaccttaaggacacacaaggactatgtg
aaagctttggcttatgcaaaagataaagaactggtggcgtctgcaggattggacaggcag
atatttctctgggatgtaaatactctcaccgcactgactgcctccaacaatacagtcacc
acttcctctttgagtggaaacaaagattcaatctacagccttgcgatgaaccagatggga
acagtaattgtctctgggtctacagaaaaggtcttgagagtctgggatccacgaacttgc
caaaagctgatgaagctgaaaggacacacggacaatgtgaaagctctgctgttaaaccga
gatggaactcagtgtctctcaggcagctccgatggaacaatccgactgtggtctctgggt
caacaaaggtgtatagccacctaccgcgtccatgatgaaggggtttgggctctccaggtc
aacgaaggcttcacacatgtctattcaggaggaagggaccggaagatctattgtacagac
ctacggaatcctgatattcgcttgcttatatgtgaagagaaagcgccagttctaaagatg
gagctggataggtcagcagaccctcccgtggcactttgggtgtcaacaactaaatcctct
gtgaataaatggcctatcaaaggtatcctgaacttcagaacatctggagattatgagaat
gactgcagcacaccactcagccctatttgctcccagcctgaccagactattaaagggggg
gctagcatcatccagtgcaatattctcaatgataaaaggcacatattaaccaaagacact
aataacaatgtggcttattgggatgttttaaaggcttgcaaagtcgaagatctgggaaaa
gtagattttgaagaagaaataaagaaaaaatttaagatggtttatgtaccaaattggttc
tcagttgatctgaagactggaatgctgacgataacactagatgaaagtgattgctttgct
gcatgggtttctgccaaggatgctggattcagcagttcggatggatctgacccaaaattg
aatcttggaggtctcttgctacaagcactgctggagttttggcccagaacccacattaat
cccatggaagaagaggaaaatgaagtaaatcatgtggcaaatggtgagcaagaaaaccgg
atacagaaaggcaatgggtatttccaagtgcccccacatacaccagttatctttggtgaa
gctggaggccgcacccttttcaggttattatgtagagactctggtggagaaacagaatcc
atgttactcaatgagacggtgccgcagtgggtgattgatatcactgtagataaaaatatg
ccaaaattcaacaaaatccccttctacctccaaccccattcatcatctggtgcaaaaact
ctgaaaaaagacagattgtcagcaagtgacatgctccaagtcaggaaagtgatggaacat
gtatatgagaagataataaatgcggatacagagtctcagacaacaagctcgtccaataac
gagaagccgggagaacaagaaaaagaggaagatatcgctgtgttggcagaagagaagatc
gagcttctttgtcaggaccagaatgaaaattgccggtgggatggcattcagagcgattca
ctttacaaagctgcccaagattgcctcacgaggaaacttcaggcgacttcggaaaacaga
tattggaccctaacatggacctccggactgtaa

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