KEGG   Xenopus laevis (African clawed frog): 431914
Entry
431914            CDS       T01010                                 
Symbol
smu1.S, bwd, fsap57, smu-1, smu1
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
xla  Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:xla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xla03041]
    431914 (smu1.S)
Spliceosome [BR:xla03041]
 Complex B
  Other components
   Complex B specific factors
    431914 (smu1.S)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_EML WD40_Gbeta LisH_TPL Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_ACSF4 Beta-prop_VPS8 WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_TEP1_C Beta-prop_Nup120_160 Ge1_WD40 Beta-prop_NWD2_C Beta-prop_Aladin Beta-prop_WDR41 Beta-prop_NUP159_NUP214 Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_WDR75_2nd Beta-prop_SCAP Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_BBS7 Beta-prop_DCAF12 Beta-prop_IP5PC_F Beta-prop_RSE1_2nd TFIIIC_delta DUF7165 VPS8_N KNTC1_N PROPPIN Beta-prop_NOL10_N LisH LisH_PAC1
Other DBs
NCBI-GeneID: 431914
NCBI-ProteinID: NP_001084865
Xenbase: XB-GENE-6251564
UniProt: Q6NRT3 A0A974DT06
LinkDB
Position
1S:84505293..84526745
AA seq 513 aa
MSIEIESSDVIRLIMQYLKENSLHRTLATLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQNQSERYIHLENL
LARSYFDPREAYPDGSSKEKRRTAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATFTQD
GHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGIAHHPHQNLIGTYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtctatcgaaattgagtcgtctgatgtcatccggcttatcatgcagtacctaaaagaa
aatagtttgcaccgtactttagcaacattgcaagaagagaccactgtgtccttaaacact
gtggatagtattgagagctttgtggctgacatcaatagtggtcattgggatacagtgctt
caagcaattcagtcactgaagctgccagacaagacactcatcgacctctatgaacaggtt
gtattagaactaattgaacttcgtgagctgggagccgccagatcccttctgaggcaaaca
gacccaatgataatgttaaaacagaaccaatcagaaagatatattcatcttgagaactta
ctggccagatcatattttgacccacgagaggcatacccagatggcagcagcaaagaaaaa
aggcgaacagcaatagctcaggcattggctggggaagtgagtgttgtacctccatcacgt
ctcatggcactgcttggtcaggcattaaaatggcagcagcatcagggtcttctgcctcca
ggtatgaccattgatttgttcagaggtaaagctgctgtgaaagacgtagaggaagagaag
ttccctacacaacttagtaggcatattaagtttggacagaaatcacatgttgaatgtgct
cgattttcacctgatggtcagtacttggttactggatctgttgatggatttattgaagtc
tggaatttcaccactggaaaaattagaaaggatcttaaataccaggctcaggacaacttt
atgatgatggatgatgctgtgttatgtatgtgcttcagtagagataccgagatgttggcg
acaggagctcaggatggcaaaataaaggtgtggaaaatccagagtggacagtgtttgagg
aggtttgaacgtgctcatagtaaaggtgtcacatgtcttagtttttccaaagacagtagt
cagattcttagtgcttcatttgaccaaactattaggattcacggcctgaaatctggaaaa
acactaaaggaattcagaggacattcctcatttgtgaatgaagcaacatttactcaagat
ggtcattatattatcagtgcttcatctgatggcacagtaaagatatggaacatgaagact
actgagtgctcaaatacctttaaatcacttggtagtacagctggaacagacatcactgta
aacagtgtcattcttctgccaaaaaatccagagcattttgttgtgtgtaaccggtccaac
acagtagtgattatgaacatgcagggacaaattgtaagaagctttagctctggtaagaga
gaaggtggagactttgtatgttgcaccttgtcgcccagaggagagtggatttactgtgtt
ggtgaggattttgtgctctactgcttcagcacggtgacaggaaaactggaaagaacattg
actgtgcatgaaaaagatgttattggaatagctcatcacccacatcagaatttgattggt
acttatagtgaagatggactcctcaaactgtggaagccgtag

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