Xenopus laevis (African clawed frog): 432035
Help
Entry
432035 CDS
T01010
Symbol
nxf1.S, nxf1
Name
(RefSeq) nuclear RNA export factor 1 S homeolog
KO
K14284
nuclear RNA export factor
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03008
Ribosome biogenesis in eukaryotes
xla03013
Nucleocytoplasmic transport
xla03015
mRNA surveillance pathway
xla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
432035 (nxf1.S)
03015 mRNA surveillance pathway
432035 (nxf1.S)
03008 Ribosome biogenesis in eukaryotes
432035 (nxf1.S)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
432035 (nxf1.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
432035 (nxf1.S)
03009 Ribosome biogenesis [BR:
xla03009
]
432035 (nxf1.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
432035 (nxf1.S)
mRNA cycle factors
Stress granule specific factors
432035 (nxf1.S)
Ribosome biogenesis [BR:
xla03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
432035 (nxf1.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_8
LRR_4
UBA_4
LRR_LRWD1
UBA_8
RelB_transactiv
Motif
Other DBs
NCBI-GeneID:
432035
NCBI-ProteinID:
NP_001084975
Xenbase:
XB-GENE-865879
UniProt:
Q6IRQ2
LinkDB
All DBs
Position
4S:complement(1714314..1745453)
Genome browser
AA seq
614 aa
AA seq
DB search
MSDGGRCYSDHDDHYGGGFFVKKRKGRGPFVGKMVSEGPHKYRNKGGYGPYPRSRLEEDD
GDVGESYESSHHRFLPYGRGGKRSHEKRDKKKFGGFHRDSPHQGRAKYNEGWKSWYKVTI
PHGKKYDKFWLLDTLQDVCPVPFTPVQFHTDHSRAHFYVDNSAAGKALKQISRTITDRDN
FKVTILTRPCPPPQSLAKELNDEEIEHFKNCMQKRYDGANQAMDMKAVRSDPDLVANKVD
VILNRKCYMTTMLQIIEDNVPELLSLDISNNKLFKLDDLAEITLKAPNLKILKLSENMIK
SDLELNKLKGLKLEELWLEGNPFCDSFRDQTSYISVVRQHFPKLLRLDGHELPPPITFDV
ETPTTLPPCKGSYLASDDIKALVLRFLQQFYACYDSEDRQGLLNVYHDEACCSLSIPFSV
GLNPSRSTIGEYFKYSRNIRKLRDANLRFKLLKQKRLNVVGFLNELPRTQHDLGSFVVDI
LAHSNTLLCFVVNGIFKEVEGQSSHALRAFSRVFVAVPGSDGGLLLVNDEQFIRDANTEE
IHKAFATTAPTPSSSPVHVLASQDMVLAFIQLSGMNSEWSHKCLEDNGWDYDQATQVFMK
LNTEGKIPDVAFIK
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacggtggcaggtgttatagcgaccacgatgatcattatggagggggtttcttc
gtgaaaaaacggaaagggcgcggtccattcgtgggcaaaatggtcagtgaaggtccccat
aaatatcgaaacaaggggggctatggaccttatccccgttctcgtcttgaggaagatgat
ggggatgtgggtgaatcatatgaatcgtcccatcatagatttttgccatatggtcgtggt
ggtaaaagaagtcatgagaaaagggacaagaagaaatttggtggctttcacagagactct
ccgcaccagggcagagcaaagtataacgagggctggaaatcatggtacaaggtcacgata
ccacatggcaagaagtatgacaagttctggttactcgacacgttgcaagatgtctgccct
gttccctttactccagtccagtttcatactgaccattcccgggctcatttctatgttgac
aactctgcggctggaaaagccttaaagcaaatatctaggacaatcacagaccgagacaac
ttcaaggtcacaattttaacacggccgtgtcctcctcctcagagcttggcaaaggagctg
aacgatgaagaaatagaacattttaagaactgtatgcagaagagatatgatggtgctaat
caagccatggatatgaaggctgtgcggagtgaccctgatttagttgccaataaagtagat
gtaatcctgaacagaaaatgttacatgacaacaatgttgcagataattgaggataatgta
cctgagctactttccctggatatcagcaacaacaaactcttcaaactagatgatttagca
gagattacacttaaagcccccaatctaaagatcctaaagctgtcagagaacatgataaaa
agtgatcttgaactgaataaactaaaaggtctgaagctggaggagctgtggttagaggga
aacccattttgtgattccttcagagaccagaccagttacatcagtgtcgtgcgacaacac
tttcccaaactgctacgactggatggccatgaactgcctcctccaatcacatttgatgtc
gaaacaccaaccactcttcccccttgtaagggcagctatctagcatctgatgacattaaa
gctctggtcttacgctttctacaacagttttatgcttgttatgattctgaagacagacag
ggtcttctaaatgtgtatcacgatgaggcatgttgctctttgagcattcctttcagtgta
ggcctgaacccatccaggagtactattggagaatatttcaagtacagcaggaatataaga
aaacttagagacgcaaacctgcgcttcaaacttcttaaacagaagcggctaaatgtggtt
ggtttcctgaatgaacttccgagaacccagcatgaccttggttcctttgtagtggatatc
cttgctcattcaaacacattactttgctttgttgtaaatggaatattcaaagaagttgag
ggacaatccagccatgctttgcgtgctttcagtcgagtgtttgttgctgtcccaggcagt
gatggagggctacttctggtgaatgatgagcagtttataagagatgccaacacagaggag
atccacaaagcctttgccacaactgctcccacaccttccagtagccccgtgcacgtcctg
gcctctcaagatatggtgctggctttcattcagttatctggcatgaattcagaatggtct
cacaagtgtcttgaggacaatggttgggactacgaccaagcaactcaagtttttatgaaa
ttaaatacagagggaaagatccccgatgttgcctttattaagtga
DBGET
integrated database retrieval system
