Xenopus laevis (African clawed frog): 432104
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Entry
432104 CDS
T01010
Symbol
cnot6l.L, ccr4b, cnot6l, cnot6l-a, cnot6l-b
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like-A
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
432104 (cnot6l.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
432104 (cnot6l.L)
Enzymes [BR:
xla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
432104 (cnot6l.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
432104 (cnot6l.L)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
432104 (cnot6l.L)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_14
LRR_1
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
432104
NCBI-ProteinID:
NP_001085037
Xenbase:
XB-GENE-6256009
UniProt:
Q6IR85
A0A974I3T4
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Position
1L:complement(87589465..87626855)
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AA seq
550 aa
AA seq
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MPKEKYDPPDPRRIYTIMSAEEVANGKKSHWDELEISGRVRSLSTSLWTLTHLTVLHLSD
NNLSRIPPDIAKLHNLVYLDLSSNKLRSLPAELGNVVSLRELLLNNNLLRVLPFELGRLF
RLQTLGLKGNPLSQDILSLYQEPDGMRKLLNYMLDNLSVHPEQLPHRPWITLKERDQILP
SVSFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMDEIISCDADIISLQEVETEQ
YFTLFMPALEERGYDGFFSPKSRAKIMSDQEKKHVDGCAIFFRTEKFSLVQKHTVEFNQI
AMANSEGSEAMLNRVMTKDNIGVSVLLEVHKDFSGAGMKPHHSSEKQLLMVANAHMHWDP
EYSDVKLIQTMMFVSELKSIIEKAACRPGSPTPDPNSIPFVLCADLNSLLDSGVVEYLTN
GGVADNHKDFKELRYNECLTNFNCNGKNGTPDGRITHGFQLRSAYENNLMPYTNYTFDFK
GVIDYIFYSKTHMDVLGILGPLDPQWMMDNNITGCPHPHIPSDHFSLLTQLELHPPLLPI
INGVHLPSRR
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaagaaaaatatgaccctcctgatcctcgcagaatttataccatcatgtcagca
gaggaggtggccaatggaaaaaagtcacactgggacgagttggagatttctggtagggtg
cggagcttgagtacgtcgctgtggaccttgacgcacttaacagtgttgcacctcagcgat
aataatctctctcgtattccacctgatatcgccaagctccataatctggtttatctggac
ctttcatccaataaactcagaagtttaccagcagagctagggaacgtagtgtctctcagg
gaattgcttttaaataacaatctgttacgggttttaccttttgaactggggcgactgttc
aggcttcagaccttggggttgaaaggcaatcctttatcacaggacattcttagcctgtac
caggaaccagacgggatgcgaaagctactgaattacatgcttgacaatctatcagttcat
ccagaacagcttcctcacaggccgtggattacattaaaagaacgagaccaaattctaccc
tccgtttccttcacagtaatgtgctacaatgtgctgtgtgataaatatgctacccggcag
ctgtatggctattgcccatcatgggcattaaactgggagtatcgaaagaaaggcatcatg
gatgagattatcagttgcgatgcagacatcatcagtcttcaggaagttgaaaccgagcaa
tacttcactctttttatgccagcattagaggaacgtggatatgatggatttttctctcca
aagtcacgtgccaaaatcatgtccgatcaagagaaaaagcacgtggatggttgtgcaata
ttcttcagaacagaaaaattcagtctagtgcaaaagcacacagtggaatttaatcagatt
gcaatggcaaactctgaggggtccgaagctatgctgaacagagtgatgacaaaggacaac
attggtgtctctgttttgttggaggtgcataaagatttttctggtgctggcatgaaaccc
catcactcatcggaaaaacagctgcttatggtggcaaatgctcacatgcactgggaccct
gagtattcagatgtgaagctcatccagaccatgatgtttgtctctgaactgaaaagcatt
attgagaaggcagcatgtaggccagggagtcccactccagatcctaattccatccccttt
gtgttgtgtgctgatctcaactctttgctagattcaggtgtggtggagtatctgacaaat
ggaggggtagccgacaatcacaaggatttcaaagagctccgatacaatgagtgtctcact
aacttcaactgcaatgggaagaatgggaccccagatggaagaatcacacatggcttccag
ctgaggagtgcctatgaaaacaacttgatgccttacacaaattacacctttgatttcaaa
ggtgttattgactacatcttctattccaagacacatatggacgttcttggcatcctgggg
cctttagatccacaatggatgatggataacaacatcactggctgcccgcacccccacatc
ccttctgaccacttctcactgttaacgcagctggaactccaccctccattactgcctatc
attaacggggtgcacttgccaagcaggaggtag
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