KEGG   Xenopus laevis (African clawed frog): 432269
Entry
432269            CDS       T01010                                 
Symbol
rbbp4.S, nurf55, rbap48, rbbp4-a, rbbp4-b, xrbbp4
Name
(RefSeq) histone-binding protein RBBP4-B
  KO
K10752  histone-binding protein RBBP4
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03082  ATP-dependent chromatin remodeling
xla03083  Polycomb repressive complex
xla04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    432269 (rbbp4.S)
   03083 Polycomb repressive complex
    432269 (rbbp4.S)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    432269 (rbbp4.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:xla03036]
    432269 (rbbp4.S)
Chromosome and associated proteins [BR:xla03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     432269 (rbbp4.S)
  Histone modification proteins
   HAT complexes
    HATB complex
     432269 (rbbp4.S)
   HDAC complexes
    Sin3A-HDAC complex
     432269 (rbbp4.S)
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     432269 (rbbp4.S)
    PRC2.2
     432269 (rbbp4.S)
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     432269 (rbbp4.S)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    432269 (rbbp4.S)
  Chromatin remodeling factors
   NuRD complex
    432269 (rbbp4.S)
   NuRF complex
    432269 (rbbp4.S)
   NuRF complex (fruit fly)
    432269 (rbbp4.S)
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML EIF3I WD40_MABP1-WDR62_2nd WD_LRWD1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st Beta-prop_DCAF12 WD40_RFWD3 ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_RIG_1st eIF2A MIOS_WD40 NBCH_WD40 Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_DCAF4 DUF1573
Other DBs
NCBI-GeneID: 432269
NCBI-ProteinID: NP_001085185
Xenbase: XB-GENE-6255728
UniProt: Q6INH0 A0A310U4Z0 A0AA97PYG2
LinkDB
Position
2S:complement(82174769..82187730)
AA seq 425 aa
MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKD
FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
INHEGEVNRARYMPQNPCIIATKTPSCDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG
YGLSWNPNLSGNLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDTEGSVDP
EGQGS
NT seq 1278 nt   +upstreamnt  +downstreamnt
atggctgataaagaggctgcgtttgatgatgccgtggaggaacgagtcataaacgaagag
tataagatatggaagaaaaacaccccgttcctgtatgatctggtgatgacccatgccttg
gaatggcctagtctgactgctcagtggctcccagatgtcaccagacccgatgggaaagat
tttagcatccacaggctggtacttgggacacatacttctgatgaacagaatcacctagta
attgctagtgtgcagcttcctaatgatgatgctcaatttgatgcttcccactacgatagt
gaaaaaggagagtttggaggctttggctccgtgagtgggaaaatagaaatcgagatcaaa
ataaatcacgagggggaagtgaacagagctcgttacatgccacagaatccatgcattatt
gccaccaaaactccatcctgtgacgttcttgtgtttgactacaccaaacacccatctaaa
ccagatccttctggtgaatgtaatccagatctccgacttcgaggtcaccaaaaggagggc
tatggtctatcctggaatcccaacctaagtggcaaccttcttagtgcttcagacgaccat
acaatatgcctgtgggatatcagtgctgtacctaaggagggcaaagtagtggatgcaaaa
accattttcacagggcacactgcagtggttgaggatgtgtcttggcatttattacatgaa
tctctctttggatcagttgcagatgatcagaaactgatgatctgggacacccgatcaaac
aacacatcaaagcccagccactctgtagatgctcacacagctgaagtgaactgtctatca
tttaacccttacagtgagttcatattggcaactgggtcagctgacaagactgttgcatta
tgggacctgcgcaatctgaagttaaagttgcattcatttgaatctcacaaagatgaaatc
ttccaggtccagtggtctccacataatgagaccatcctggcatccagtggaactgaccgt
agactaaatgtctgggatttaagtaaaataggagaagagcagtctcctgaagatgcagaa
gatggtccccctgaacttctgtttattcatggtggccatacagccaagatatcagacttc
tcttggaatcctaatgaaccatgggtgatctgttctgtatctgaggataatatcatgcag
gtctggcaaatggcggagaacatttataatgatgaagatacagagggtagtgttgatcca
gagggtcaaggttcctag

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