KEGG   Xenopus laevis (African clawed frog): 443641
Entry
443641            CDS       T01010                                 
Symbol
cdc5l.S, cdc5l
Name
(RefSeq) cell division cycle 5 like S homeolog
  KO
K12860  pre-mRNA-splicing factor CDC5/CEF1
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    443641 (cdc5l.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xla03041]
    443641 (cdc5l.S)
   03400 DNA repair and recombination proteins [BR:xla03400]
    443641 (cdc5l.S)
Spliceosome [BR:xla03041]
 Complex B
  Other components
   Prp19 complex
    443641 (cdc5l.S)
 Complex C
   Prp19-CDC5 complex
    443641 (cdc5l.S)
DNA repair and recombination proteins [BR:xla03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    443641 (cdc5l.S)
SSDB
Motif
Pfam: Myb_Cef Myb_DNA-binding Myb_DNA-bind_6 TPR_HPS5_insect Rap1_C
Other DBs
NCBI-GeneID: 443641
NCBI-ProteinID: NP_001096658
Xenbase: XB-GENE-17335797
UniProt: Q4V858 A0A8J0Q950
LinkDB
Position
5S:complement(135328340..135383281)
AA seq 804 aa
MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK
TEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEYLLDKAAQRDNEEETADDP
RKLKPGEIDPNPETKPARPDPVDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEAR
RLAALQKRRELRAAGIEIQKKRKKKRGVDYNAEIPFEKKPAPGFYDTSEENYNALNADFR
KLRQQDLDGDLRSEKEAKDRKKDKQNIKRKKESDLPSAILQMTGGVSELTKKRSKLVLPS
PQISDAELEEVVKIGQASEIARQTAEESGITNSASSTLLSEYNVANNSVALRTPKTPAAQ
DRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGATPQRQVVQTPNTVLSTPFRTPSQS
SEGITPRGGMTPKPVIGATPGRTPLRDKLNINPEDGTVDYNDPSYIKQMERESREHLRLG
LLNLPAPKNDFEIVLPENAERELEDRDQDDSFVEDAADIEAKKQAIREAQRAKELKNRHK
AVQKDLPRPSEVNQTILRPVNVEPPLTDLQKSEEMIKKEMIVMLHHDTLHHPYADNVGGK
RGKAPGSAATNAESIAFLEHTSYVKYTKEELKHAEELLQQEMEVVKQGMGHGELSLDSYN
QVWEECYSQVLYLPGQGRYTRANLASKKDRIESLEKRLEVNRGHMTGEAKRAAKMEKKLK
ILLGGYQSRAMGLIKQLNEVWDQYEQANLELGTFEELKKHEDIAIPRRIECLKEDVQRQE
ERERELQQRFAELMLEKESYEAIL
NT seq 2415 nt   +upstreamnt  +downstreamnt
atgccgcgaattatgataaaaggcggggtgtggcggaacaccgaggatgaaattctcaaa
gcggctgttatgaaatatgggaaaaaccaatggtctcgtattgcttccttgctgcaccgg
aaatccgccaaacagtgcaaagctcgatggtatgaatggcttgacccgagcatcaaaaag
acagaatggtctcgagaggaagaggagaaattacttcatttggccaagctgatgccaact
cagtggaggacaatcgctcctatcataggaagaacagccgcccagtgcttggagcactat
gaatatttgctagataaagctgcccaacgagacaatgaagaggagaccgcagatgatcct
cgaaagctcaagccaggagaaattgatccaaatcctgaaacaaaaccagcaaggcctgat
ccagtggacatggatgaagatgaacttgagatgctttcagaggctagagctcgtcttgcc
aacactcaaggcaaaaaagccaagaggaaagcaagagagaaacagctggaagaagccagg
cgtcttgcagcccttcagaagaggagagagctccgtgctgctggaattgaaattcaaaag
aagaggaaaaagaaacgcggtgttgactacaatgcagaaattccttttgaaaagaagccc
gccccagggttctacgatacttctgaagaaaactacaatgccttgaacgcagacttcaga
aagctccgtcagcaagacctggatggtgacctgagatcagaaaaagaagcaaaggaccgg
aagaaagacaaacaaaacattaaaaggaaaaaggaatctgatttgccgtcggccattctt
cagatgactggaggggtctcggaacttactaaaaagagaagcaaattagttctgccgtcc
cctcagatttcagatgctgaactggaagaagtggtgaagatcggccaagccagtgaaatt
gctcgacagaccgcagaggagtctggtattaccaattctgcatccagcacgttactgtca
gaatacaatgtggccaataatagcgtagcactcaggacgcccaagactccagcagcacaa
gaccgtattcttcaggaagcgcagaatctgatggccctcacaaacgtggatacaccatta
aagggaggcctcaacactcctcttcatgaaagtgatttttcaggagctacaccacagaga
caagtggtacagactcccaacactgtgctgtccacgccattcagaactccttcccagagc
tccgaaggaataacccctcggggtggaatgactcccaaaccagttattggggctacccct
ggaaggactccgctgcgggacaagctgaatattaatcccgaggacggcacagtggattat
aacgacccatcttacataaaacagatggaaagggaatctcgggagcacctgcgccttggt
ttgctcaatcttccagcaccgaaaaatgactttgagattgtgttgccggaaaacgcagag
cgggagctggaggatcgagatcaggacgattcctttgtagaagatgctgccgacatagag
gccaaaaagcaggcaatcagagaagcgcagcgagcaaaggagctcaagaacaggcacaag
gcagtgcagaaggatttaccacgaccatcagaggtgaatcaaactattctgaggcctgta
aacgtggagccgccacttacagatttgcagaaaagcgaagagatgataaaaaaggaaatg
atcgtgatgctccatcacgacaccctccaccatccttatgccgataatgtaggagggaag
agagggaaggcgcccggctcggcagcgaccaatgcagaaagcattgcatttctcgaacac
acctcgtatgtaaagtatactaaggaggaactcaagcatgccgaggaactcctccaacaa
gagatggaagtggtgaagcaaggtatgggccacggggagctctcgcttgactcgtacaat
caggtgtgggaggagtgttatagtcaggtgttgtaccttcctggacaaggccgttacaca
cgggccaacctggccagcaaaaaggacaggattgaatcacttgagaagagactagaggtc
aacagaggtcacatgacaggagaagccaaaagggcagccaagatggagaagaaactgaag
atcttgctcggtggctaccagtcccgggccatggggctcatcaaacagctgaatgaagtc
tgggatcagtacgaacaggcaaacctggaactgggaacgttcgaagaacttaaaaaacac
gaagatatcgccattcctaggaggatagagtgtctgaaagaggacgtccagcgacaagaa
gagcgagagagagagctgcagcagagatttgccgagcttatgctggagaaagaaagctac
gaagccatactgtga

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