Xenopus laevis (African clawed frog): 443865
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Entry
443865 CDS
T01010
Symbol
exosc9.L, exosc9, scl75
Name
(RefSeq) exosome component 9 L homeolog
KO
K03678
exosome complex component RRP45
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
443865 (exosc9.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
443865 (exosc9.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
443865 (exosc9.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
hSH3
Motif
Other DBs
NCBI-GeneID:
443865
NCBI-ProteinID:
NP_001085439
Xenbase:
XB-GENE-992916
UniProt:
Q6GQJ3
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Position
1L:complement(70590225..70597791)
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AA seq
431 aa
AA seq
DB search
MKETPLSNCERNFLLQAITEKKRLDGRQTYDYRNIKIAFGTDYGCCIVELGKTRVLCQVS
CEIVTPKMSRPTEGILFFNLEISPMAFPGFEMGRQSELSVKLNRLLERCLRNSKCIDTES
LCVAAGEKVWQIRVDLHLLNHEGNIIDAASIAAIAGLCHFRRPDVSVQGEEVTVYTPEER
DPVPLSIHHMPICVSFAFFQQGIYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGI
MLLKEQVLRCSKVAGVKVGEITELIQKALENDKKARKEGGKFGFAESLPDKRITALKMEK
SSVDTTDVETKAEKIILDADPPCRVISKPVVWTEGTAQIGEGQGNTWGQIDESEDDEDDE
DSAPESPVVEIQSKKTSLNDDVVTLSDSEEEDVIILQPEKPSQIRVTEQQACSASDISSA
KKKKKNKSAQK
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagacgccgctgtccaactgtgagaggaactttcttcttcaggcaattactgag
aaaaagcgtcttgatggcaggcagacctatgattacaggaatattaaaattgcttttgga
acagactatggctgttgtattgtggagcttggaaagaccagggtactttgccaggtctcc
tgtgaaatcgttacccccaagatgagccgtcctactgagggaatacttttcttcaatctt
gagatttccccaatggcatttccaggttttgaaatggggaggcaatcagaattgtctgta
aaattaaatagattgttggagagatgtttgcggaactccaagtgcatagacacagaatct
ctctgtgttgctgctggcgagaaggtatggcagatacgtgttgatctgcacttgttaaac
catgaaggaaacatcattgatgcagcaagcattgcagctattgcaggattgtgtcatttc
aggaggcccgatgtgtctgtccaaggggaagaggtcactgtgtacactccagaagaacgt
gatcctgtgcctctcagcatccatcacatgccaatttgtgtcagctttgccttttttcag
caaggaatatacttgttagtagatcccaatgaacgcgaggagcgggttatggacggctta
ctggtgattgcaatgaacaaacaccgtgaaatctgtacaattcagtccagtggtgggatt
atgctgcttaaagaacaggttctgaggtgcagcaaggtagcaggtgtgaaggtgggagaa
ataacagagctcattcaaaaggccctggaaaacgataaaaaggccaggaaagaaggaggc
aagtttggatttgcagaatctctaccggataaaagaataaccgctctaaaaatggaaaaa
tcttccgttgatacaacagatgtggaaaccaaggccgagaagataatattggatgctgat
cctccatgtagagtcatttctaaaccagtagtatggactgaaggaacagcccagattggg
gagggtcagggaaacacatggggccaaattgacgaatcagaagatgatgaggatgatgaa
gactctgcccctgaaagcccagtggttgagattcaatcaaagaaaacaagtttaaatgat
gatgttgtgacactgtcggatagtgaagaagaagatgtaataattctacagcctgagaaa
ccatcacaaataagagtcacggaacaacaagcatgttcagcaagtgatatatccagtgcg
aagaagaagaaaaagaataaatctgcacaaaagtga
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