Xenopus laevis (African clawed frog): 443898
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Entry
443898 CDS
T01010
Symbol
ncbp1.S, cbp80, ncbp, ncbp1, ncbp1-a, ncbp1-b, sto1
Name
(RefSeq) nuclear cap-binding protein subunit 1-B
KO
K12882
nuclear cap-binding protein subunit 1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03013
Nucleocytoplasmic transport
xla03015
mRNA surveillance pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
443898 (ncbp1.S)
09122 Translation
03013 Nucleocytoplasmic transport
443898 (ncbp1.S)
03015 mRNA surveillance pathway
443898 (ncbp1.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
443898 (ncbp1.S)
03041 Spliceosome [BR:
xla03041
]
443898 (ncbp1.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
443898 (ncbp1.S)
Spliceosome [BR:
xla03041
]
Common components
Common spliceosomal components
Cap binding complex
443898 (ncbp1.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G
MIF4G_like
Importin_rep_6
DUF1690
DUF1664
Motif
Other DBs
NCBI-GeneID:
443898
NCBI-ProteinID:
NP_001085472
Xenbase:
XB-GENE-6251717
UniProt:
Q6GQD0
LinkDB
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Position
1S:97708915..97737282
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AA seq
791 aa
AA seq
DB search
MSRRRHSDENDGGQPHKRRRTSEPLEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKNKILRILCFVARLLPEKMTVYTTLVGLLNARNYNFGGEFVEAMIRHLKETIKLNA
YNEAIYLVRFLCDLVNCHVIAAPSMVAMFESFVGVTQEEDIPQVRSDWYVYAVLSSLPWV
GKELYEKKDVEMDQILSQIEAYLKQRQKLHLSILQVWSAEKPHPQEEYLDCLWAQVQKLK
KDRWQERHIQRPYLAFDSVLCEALQHNLPPFTPPPHTEDSVYPVPRVIFRMFDYTDAPEG
PVMPGSHSVERFVIEENLHCILKSHWRERKTCAAQLLSYPEKNKIPLNYHIVEVIFGELF
QLPSPPQIDVMYTTLLIELCKLQPGSLPQVLAQASEMLYTRLDTMNTTCIDRFINWFSHH
LSNFQFRWNWEDWADCLSQDLDKPKPQFVREVLEKCMRLSYHQRILDIVPATFSALYPAN
PSNVIKYGDESNSALPGYSVAVILTNAIKNKASDKEIFNILKDIPNPNQDDYDDEGIGFN
PLKIEVFVQTLLNLASKSFSHSFSALAKFHDIFKALSESDEGKLHILRVVYDVWKNHPQM
IAVLLDKMIRTQIVDCAAVANWIFSPELSPDFTRFYIWEILHSTIRKMNKHVQKIQKELE
DTKQRLAKQHKHRDSDDNDEDSGRKDGPLEEQIERLQEKVESAQSEQKNLFLVIFQRFIM
ILTEHLVRCETGGIDVNTAWYKNCRERLQQIFLQHHQTIQQYMVTLENLLFTAELDHHIL
TVFQQFCALQS
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggaggaggcacagtgacgagaatgatggaggacaacctcacaaaaggcgaaga
acctctgaaccccttgagatcgaagaccgattggaatctttgatatgcagagttggtgaa
aagagtacatcctcactagagagcaacctagaaggtctggctggagttttagaagctgat
ctgcctaactataaaaacaagatcttaagaatcctttgttttgtcgctcggttgctgcct
gaaaaaatgactgtatacactacattagttgggttacttaatgccagaaactacaatttt
ggtggtgagtttgtggaagccatgatacgccatctcaaggagaccattaaactgaatgct
tacaatgaggcaatatatttagttcgttttctttgtgatcttgtaaattgccatgtaatc
gcagccccatcgatggttgccatgtttgaaagctttgttggggtcactcaggaagaagat
attccccaggtgcgaagtgactggtatgtgtatgcagttctttcttcactgccatgggtt
ggaaaagaattgtatgagaagaaagatgttgagatggatcaaattttatcccaaattgag
gcttacttgaagcaacggcaaaagctccatctgtctattctgcaagtatggtcagcagaa
aaaccacacccacaggaagagtatttagactgcctgtgggcccaagtacagaagctaaaa
aaggaccgctggcaggaaagacacatccaacgtccataccttgcctttgacagtgttctg
tgtgaagctttgcagcacaatcttccaccattcacaccaccacctcatactgaagattct
gtgtacccagtgccaagagtaattttcaggatgtttgattacacagatgcacctgagggt
ccagtcatgcctggaagtcattctgtagagcgctttgttatagaagaaaatctgcactgt
atacttaaatcacattggcgtgaaaggaaaacatgtgctgctcagctgttaagctaccca
gagaagaacaaaattcccttgaactatcacatagttgaggtgatctttggagagctgttt
cagttaccttctccaccacagattgacgtcatgtatactacacttctaatcgaactttgc
aaactgcaacctggatctttgccacaagtgcttgcacaagcctctgaaatgttgtataca
cgcttggatacgatgaacacaacttgtattgacaggtttataaactggttttcacaccat
ctaagcaactttcaattcaggtggaactgggaggactgggcagactgtctttctcaagac
ttagataaaccaaaaccacaatttgttcgtgaagtactcgagaaatgcatgaggctttca
taccaccagagaatattggacattgtacctgcaacattttctgcattatatcccgctaat
ccctccaatgtgatcaaatatggtgatgagagcaacagtgctttgcctggatactctgtt
gctgttattttgacaaatgcaattaaaaataaagcaagcgataaagagatttttaacatt
ttaaaagatatccctaatcctaatcaagatgactatgatgatgaaggaatcggttttaat
ccacttaagattgaggtttttgtacagaccctgcttaatctagcatcaaagtcctttagt
cactcgtttagtgctcttgcaaagtttcatgacatctttaaagcattatctgagagtgat
gaagggaagcttcatattctaagagtcgtttatgacgtttggaaaaatcacccgcagatg
attgctgtgttactggataagatgatacgaacacaaattgttgactgtgcagcagtggca
aactggatcttctccccagagttatcacctgacttcaccaggttttatatttgggaaata
ttgcactctacaattcggaaaatgaataaacatgttcagaaaatccaaaaagagctggaa
gacactaagcaaaggctagctaaacagcataaacatagagacagtgatgacaatgatgaa
gacagtggaagaaaagatggtcctttagaagaacaaattgagcgattgcaagagaaagta
gagtctgctcagagtgagcaaaagaatttgttccttgtaattttccagaggtttatcatg
atacttacagaacacttagtacgatgtgaaaccggaggtattgatgtgaatactgcttgg
tataagaactgcagagagagacttcagcagatatttctacagcatcatcagacaatccag
cagtatatggtgaccctggaaaacctcttgttcacagcagaactggaccatcacattctg
actgtcttccagcagttttgtgcattacagtcttaa
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